> Sorting nexin 17 (SNX17)
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UGID:174903     UniGene Hs.278569     Homo sapiens (human)   SNX17 Order cDNA clone, Links
Sorting nexin 17 (SNX17)

Human protein-coding gene SNX17. Represented by 1889 ESTs from 452 cDNA libraries. Corresponds to 11 reference sequences (different isoforms). [UniGene 174903 - Hs.278569]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_001089913.2 PREDICTED: sorting nexin-17 isoform 1 M. mulatta 100.0 469
XP_003908466.1 PREDICTED: sorting nexin-17 isoform 1 P. anubis 100.0 469
XP_515357.3 PREDICTED: sorting nexin-17 isoform 6 P. troglodytes 100.0 469
NP_055563.1 SNX17 gene product H. sapiens 100.0 469
XP_540126.2 PREDICTED: sorting nexin-17 isoform 2 C. lupus familiaris 100.0 469
XP_001502367.1 PREDICTED: sorting nexin-17 isoform 1 E. caballus 99.8 469
NP_001015638.1 SNX17 gene product B. taurus 99.8 469
XP_003481313.1 PREDICTED: sorting nexin-17-like isoform 1 S. scrofa 99.6 474
NP_710147.1 Snx17 gene product M. musculus 99.2 469
NP_001085416.1 sorting nexin 17 X. laevis 84.4 466
NP_001038622.2 snx17 gene product D. rerio 82.2 471
Other hits (2 of 26) [Show all]SpeciesId(%)Len(aa)
NP_001011981.1 Snx17 gene product R. norvegicus 99.4 469
NP_001142236.1 uncharacterized protein LOC100274405 Z. mays 99.4 469

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; uncharacterized tissue; skin; testis; uterus; lung; intestine; placenta; connective tissue; kidney; pancreas; prostate; liver; thymus; eye; spleen; blood; mixed; heart; embryonic tissue; mammary gland; stomach; ovary; cervix; adrenal gland; esophagus; ascites; parathyroid; trachea; vascular; lymph; lymph node; bladder; pituitary gland; umbilical cord; salivary gland; thyroid; bone; muscle; bone marrow; adipose tissue; tonsil; mouth; ganglia; pineal gland; nerve; pharynx
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 2
Map position: 2p23-p22
UniSTS entry: Chr 2 RH25297
UniSTS entry: Chr 2 WIAF-1573 [Map Viewer]
UniSTS entry: Chr 2 D2S2598
UniSTS entry: Chr 2 WI-19785 [Map Viewer]
UniSTS entry: Chr 2 RH75415
UniSTS entry: Chr 1 D1S3698
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (35)

BT007167.1 Homo sapiens sorting nexin 17 mRNA, complete cds P
BC050590.1 Homo sapiens sorting nexin 17, mRNA (cDNA clone MGC:60025 IMAGE:6044270), complete cds PA
AK129689.1 Homo sapiens cDNA FLJ26178 fis, clone ADG04179 P
CR457081.1 Homo sapiens full open reading frame cDNA clone RZPDo834F0711D for gene SNX17, sorting nexin 17; complete cds, incl. stopcodon P
NM_014748.3 Homo sapiens sorting nexin 17 (SNX17), transcript variant 1, mRNA P
AK222543.1 Homo sapiens mRNA for sorting nexin 17 variant, clone: adSU01126 PA
BC002610.1 Homo sapiens sorting nexin 17, mRNA (cDNA clone MGC:2988 IMAGE:3143104), complete cds PA
BC002524.1 Homo sapiens sorting nexin 17, mRNA (cDNA clone MGC:765 IMAGE:3140610), complete cds PA
BC014620.2 Homo sapiens sorting nexin 17, mRNA (cDNA clone MGC:4075 IMAGE:3010648), complete cds PA
AK308487.1 Homo sapiens cDNA, FLJ98528 PA
AK307122.1 Homo sapiens cDNA, FLJ97070 P
AK309640.1 Homo sapiens cDNA, FLJ99681 P
AK293252.1 Homo sapiens cDNA FLJ53821 complete cds, highly similar to Sorting nexin-17 P
AK300641.1 Homo sapiens cDNA FLJ51103 complete cds, highly similar to Sorting nexin-17 P
AK293464.1 Homo sapiens cDNA FLJ53824 complete cds, highly similar to Sorting nexin-17 PA
AK298620.1 Homo sapiens cDNA FLJ56223 complete cds, highly similar to Sorting nexin-17 P
AK300144.1 Homo sapiens cDNA FLJ51699 complete cds, highly similar to Sorting nexin-17 P
AK297054.1 Homo sapiens cDNA FLJ57319 complete cds, highly similar to Sorting nexin-17 P
AK298869.1 Homo sapiens cDNA FLJ51943 complete cds, highly similar to Sorting nexin-17 P
AK298856.1 Homo sapiens cDNA FLJ51047 complete cds, highly similar to Sorting nexin-17 PA
AK295278.1 Homo sapiens cDNA FLJ61770 complete cds, highly similar to Sorting nexin-17 P
BC032320.1 Homo sapiens sorting nexin 17, mRNA (cDNA clone IMAGE:5225353), containing frame-shift errors PA
BC021108.1 Homo sapiens sorting nexin 17, mRNA (cDNA clone IMAGE:4622841), with apparent retained intron PA
AK316373.1 Homo sapiens cDNA, FLJ79272 complete cds, highly similar to Sorting nexin-17 PA
D31764.1 Homo sapiens KIAA0064 mRNA, partial cds P
NR_049787.1 Homo sapiens sorting nexin 17 (SNX17), transcript variant 10, non-coding RNA P
NR_049785.1 Homo sapiens sorting nexin 17 (SNX17), transcript variant 8, non-coding RNA P
NR_049783.1 Homo sapiens sorting nexin 17 (SNX17), transcript variant 6, non-coding RNA P
NM_001267061.1 Homo sapiens sorting nexin 17 (SNX17), transcript variant 4, mRNA P
NM_001267059.1 Homo sapiens sorting nexin 17 (SNX17), transcript variant 2, mRNA P
NR_049788.1 Homo sapiens sorting nexin 17 (SNX17), transcript variant 11, non-coding RNA P
NR_049786.1 Homo sapiens sorting nexin 17 (SNX17), transcript variant 9, non-coding RNA P
NR_049784.1 Homo sapiens sorting nexin 17 (SNX17), transcript variant 7, non-coding RNA P
NR_049782.1 Homo sapiens sorting nexin 17 (SNX17), transcript variant 5, non-coding RNA P
NM_001267060.1 Homo sapiens sorting nexin 17 (SNX17), transcript variant 3, mRNA P

EST sequences (10 of 1889) [Show all sequences]

AI002453.1 Clone IMAGE:1592893 kidney 3' read A
AI002695.1 Clone IMAGE:1699200 kidney 3' read A
AI078024.1 Clone IMAGE:1674423 mixed 3' read
R21069.1 Clone IMAGE:36325 brain 5' read P
AA885889.1 Clone IMAGE:1492561 kidney 3' read
AI085369.1 Clone IMAGE:1681661 skin 3' read P
AI087274.1 Clone IMAGE:1681384 skin 3' read P
AI159849.1 Clone IMAGE:1703615 brain 3' read
BX097842.1 Clone IMAGp998K10280_;_IMAGE:49322 brain A
AI186601.1 Clone IMAGE:1724863 placenta 3' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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