> Agrin (AGRN)
NCBI UniGene banner graphic
PubMed Nucleotide Protein Genome Structure Popset Taxonomy
 Search
NCBI

UniGene
Homepage
FAQs
Help
Query Tips
Build Info
Library Browser
DDD
Download UniGene

Related Databases
Gene
HomoloGene
EST
SRA

NIH cDNA Projects
MGC | ZGC | XGC
Finding cDNAs
UGID:173551     UniGene Hs.273330     Homo sapiens (human)   AGRN Links
Agrin (AGRN)

Human protein-coding gene AGRN. Represented by 610 ESTs from 203 cDNA libraries. Corresponds to reference sequence NM_198576.3. [UniGene 173551 - Hs.273330]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_940978.2 AGRN gene product H. sapiens 100.0 2044
XP_003319002.1 PREDICTED: agrin-like P. troglodytes 99.5 2044
NP_067617.3 Agrn gene product M. musculus 87.1 2027
NP_001170923.1 hm:gc12 gene product D. rerio 64.4 2015
Other hits (2 of 25) [Show all]SpeciesId(%)Len(aa)
XP_003918913.1 PREDICTED: agrin P. anubis 97.5 2000
XP_001088755.2 PREDICTED: agrin-like M. mulatta 94.5 2366

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: embryonic tissue; brain; mixed; lung; eye; ovary; prostate; kidney; intestine; uterus; skin; ascites; pancreas; stomach; liver; uncharacterized tissue; placenta; mammary gland; connective tissue; testis; spleen; nerve; bone; heart; cervix; larynx; thyroid; lymph node; vascular; epididymis; pituitary gland; parathyroid; trachea
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 1
Map position: 1p36.33
UniSTS entry: Chr 1 SHGC-74081 [Map Viewer]
UniSTS entry: Chr 1 RH80426
UniSTS entry: Chr 1 D1S2336E
UniSTS entry: Chr 1 D15S1477
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (11)

BC063620.1 Homo sapiens agrin, mRNA (cDNA clone IMAGE:4179742), partial cds PA
AB191264.1 Homo sapiens AGRN mRNA for agrin, complete cds P
BC084578.1 Homo sapiens agrin, mRNA (cDNA clone IMAGE:5727776), partial cds P
NM_198576.3 Homo sapiens agrin (AGRN), mRNA PA
AK021586.1 Homo sapiens cDNA FLJ11524 fis, clone HEMBA1002547, highly similar to Agrin precursor P
BC004220.2 Homo sapiens agrin, mRNA (cDNA clone IMAGE:3506210), partial cds PA
BC007649.1 Homo sapiens agrin, mRNA (cDNA clone IMAGE:3544662), partial cds PA
BC034009.1 Homo sapiens agrin, mRNA (cDNA clone IMAGE:3850833), partial cds PA
U84406.1 Human agrin mRNA, partial cds P
S44195.1 AGRN=agrin {alternatively spliced} [human, mRNA, 188 nt]
AF016903.1 Homo sapiens agrin precursor mRNA, partial cds P

EST sequences (10 of 610) [Show all sequences]

AA991526.1 Clone IMAGE:1609662 mammary gland 3' read A
AA905029.1 Clone IMAGE:1507318 mixed 3' read A
AI017144.1 Clone IMAGE:1639214 testis 3' read A
AI041804.1 Clone IMAGE:1665421 skin 3' read A
AI056761.1 Clone IMAGE:1673903 mixed 3' read A
AI094440.1 Clone IMAGE:1634790 mixed 3' read
AI123226.1 Clone IMAGE:1566445 mixed 3' read A
AI148248.1 Clone IMAGE:1681739 skin 3' read A
AI087281.1 Clone IMAGE:1681381 skin 3' read P
AI221991.1 Clone IMAGE:1842899 mixed 3' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
NLM | NIH | UniGene | Privacy Statement | Disclaimer | NCBI Help