> Vacuolar protein sorting 8 homolog (S. cerevisiae) (VPS8)
NCBI UniGene banner graphic
PubMed Nucleotide Protein Genome Structure Popset Taxonomy
 Search
NCBI

UniGene
Homepage
FAQs
Help
Query Tips
Build Info
Library Browser
DDD
Download UniGene

Related Databases
Gene
HomoloGene
EST
SRA

NIH cDNA Projects
MGC | ZGC | XGC
Finding cDNAs
UGID:172685     UniGene Hs.269263     Homo sapiens (human)   VPS8 Order cDNA clone, Links
Vacuolar protein sorting 8 homolog (S. cerevisiae) (VPS8)

Human protein-coding gene VPS8. Represented by 269 ESTs from 145 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 172685 - Hs.269263]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001009921.1 VPS8 gene product H. sapiens 100.0 1427
XP_003894790.1 PREDICTED: vacuolar protein sorting-associated protein 8 homolog P. anubis 100.0 966
XP_003310234.1 PREDICTED: vacuolar protein sorting-associated protein 8 homolog P. troglodytes 99.8 1429
XP_001097319.1 PREDICTED: vacuolar protein sorting-associated protein 8 homolog isoform 6 M. mulatta 99.8 1427
NP_001074835.1 Vps8 gene product M. musculus 97.3 1428
NP_001074085.2 vacuolar protein sorting-associated protein 8 homolog D. rerio 80.4 1389
NP_648048.1 CG10144 D. melanogaster 49.0 192
Other hits (2 of 30) [Show all]SpeciesId(%)Len(aa)
XP_001498691.1 PREDICTED: vacuolar protein sorting-associated protein 8 homolog isoform 1 E. caballus 99.2 1427
XP_849791.1 PREDICTED: vacuolar protein sorting-associated protein 8 homolog isoform 2 C. lupus familiaris 99.1 1427

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; lymph; mouth; umbilical cord; spleen; thymus; connective tissue; testis; mammary gland; uncharacterized tissue; bladder; spinal cord; ear; uterus; eye; pharynx; kidney; embryonic tissue; mixed; lung; muscle; pancreas; placenta; lymph node; intestine; liver; prostate; skin; blood; bone; cervix; adrenal gland; bone marrow; salivary gland; heart; trachea; esophagus; ovary; nerve
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 3
Map position: 3q27.2
UniSTS entry: Chr 3 SHGC-30122 [Map Viewer]
UniSTS entry: Chr 3 RH104275
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (14)

AB018347.1 Homo sapiens mRNA for KIAA0804 protein, partial cds P
BX647915.1 Homo sapiens mRNA; cDNA DKFZp686M17141 (from clone DKFZp686M17141) PA
NM_015303.3 Homo sapiens vacuolar protein sorting 8 homolog (S. cerevisiae) (VPS8), transcript variant 2, mRNA PA
NM_001009921.2 Homo sapiens vacuolar protein sorting 8 homolog (S. cerevisiae) (VPS8), transcript variant 1, mRNA PA
AK022945.1 Homo sapiens cDNA FLJ12883 fis, clone NT2RP2003981, weakly similar to VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS8 P
BC001001.2 Homo sapiens vacuolar protein sorting 8 homolog (S. cerevisiae), mRNA (cDNA clone IMAGE:3048733), partial cds PA
EF491783.1 Homo sapiens clone VPS8 mRNA, partial sequence; alternatively spliced
AK056661.1 Homo sapiens cDNA FLJ32099 fis, clone OCBBF2001140, weakly similar to VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS8 P
AK292423.1 Homo sapiens cDNA FLJ78757 complete cds PA
AK309244.1 Homo sapiens cDNA, FLJ99285 P
AK308728.1 Homo sapiens cDNA, FLJ98769 P
AL833838.1 Homo sapiens mRNA; cDNA DKFZp761L03121 (from clone DKFZp761L03121) PA
BC140768.1 Homo sapiens vacuolar protein sorting 8 homolog (S. cerevisiae), mRNA (cDNA clone MGC:176445 IMAGE:9021636), complete cds P
BC036005.2 Homo sapiens cDNA clone IMAGE:4733107, partial cds PA

EST sequences (10 of 269) [Show all sequences]

AA862693.1 Clone IMAGE:1469084 uncharacterized tissue 3' read A
AA993423.1 Clone IMAGE:1624624 embryonic tissue 3' read A
AI041936.1 Clone IMAGE:1664615 skin 3' read A
AI089931.1 Clone IMAGE:1686931 brain 3' read A
T06362.1 Clone HFBDS40 brain P
CB054927.1 Clone IMAGE:3291562 brain 3' read A
CB054928.1 Clone IMAGE:3291562 brain 5' read P
BX089182.1 Clone IMAGp998M231201_;_IMAGE:503614 uterus P
CB145296.1 Clone L16HLK3-19-C01 liver 5' read
AI269990.1 Clone IMAGE:1959838 esophagus 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
NLM | NIH | UniGene | Privacy Statement | Disclaimer | NCBI Help