|
Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C (SEMA3C)
Human protein-coding gene SEMA3C. Represented by 381 ESTs from 139 cDNA libraries. Corresponds to reference sequence NM_006379.3. [UniGene 172631 - Hs.269109]
SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
| Best Hits and Hits from model organisms | Species | Id(%) | Len(aa) |
|
|
PREDICTED: semaphorin-3C isoform 2 |
P. troglodytes |
100.0 |
768 |
|
|
SEMA3C gene product |
H. sapiens |
100.0 |
750 |
|
|
PREDICTED: semaphorin-3C-like isoform 2 |
M. mulatta |
99.9 |
750 |
|
|
PREDICTED: semaphorin-3C |
P. anubis |
99.9 |
750 |
|
|
Sema3c gene product |
M. musculus |
98.5 |
750 |
|
|
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C precursor |
X. laevis |
88.0 |
747 |
|
|
PREDICTED: semaphorin-3C |
D. rerio |
78.5 |
721 |
| Other hits (2 of 17) [Show all] | Species | Id(%) | Len(aa) |
|
|
PREDICTED: semaphorin-3C |
C. lupus familiaris |
99.1 |
749 |
|
|
PREDICTED: sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C-like |
O. cuniculus |
98.9 |
750 |
GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
|
EST Profile: | Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this] |
|
GEO Profiles: |
Experimental gene expression data (Gene Expression Omnibus). |
|
cDNA Sources: |
brain; testis; mammary gland; uterus; connective tissue; pancreas; eye; uncharacterized tissue; ear; vascular; embryonic tissue; bladder; trachea; mouth; prostate; lung; esophagus; muscle; mixed; skin; liver; kidney; adrenal gland; intestine; spinal cord; blood; bone; stomach; heart; thyroid; nerve; spleen; adipose tissue |
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.
mRNA sequences (8)
|
NM_006379.3 |
Homo sapiens sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C (SEMA3C), mRNA |
PA |
|
AK312478.1 |
Homo sapiens cDNA, FLJ92836, Homo sapiens sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C (SEMA3C), mRNA |
P |
|
BC030690.1 |
Homo sapiens sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C, mRNA (cDNA clone MGC:26266 IMAGE:4824598), complete cds |
PA |
|
AK299322.1 |
Homo sapiens cDNA FLJ50181 complete cds, highly similar to Semaphorin-3C precursor |
P |
|
AK304294.1 |
Homo sapiens cDNA FLJ55486 complete cds, highly similar to Semaphorin-3C precursor |
P |
|
AF086506.1 |
Homo sapiens full length insert cDNA clone ZE02E03 |
A |
|
D32000.1 |
Homo sapiens mRNA, ovarian cancer |
|
|
AB000220.1 |
Homo sapiens mRNA for semaphorin E, complete cds |
P |
EST sequences (10 of 381) [Show all sequences]
|
AA977698.1 |
Clone IMAGE:1556018 |
uncharacterized tissue |
3' read |
A |
|
AI090512.1 |
Clone IMAGE:1692100 |
heart |
3' read |
|
|
BX114577.1 |
Clone IMAGp998H161157_;_IMAGE:486591 |
uterus |
|
|
|
AI261434.1 |
Clone IMAGE:1868398 |
kidney |
3' read |
|
|
CB158967.1 |
Clone L18POOL1n1-32-G11 |
liver |
5' read |
|
|
CB128336.1 |
Clone L11SNU354-15-H12 |
liver |
5' read |
|
|
AI275950.1 |
Clone IMAGE:1990197 |
uterus |
3' read |
A |
|
CB131490.1 |
Clone L13SNU387-7-E06 |
liver |
5' read |
|
|
CB149108.1 |
Clone L15CKK1-35-B08 |
liver |
5' read |
P |
|
AI241943.1 |
Clone IMAGE:1977280 |
brain |
3' read |
|
Key to Symbols
P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria
|
|
