> Jumonji, AT rich interactive domain 2 (JARID2)
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UGID:172606     UniGene Hs.269059     Homo sapiens (human)   JARID2 Order cDNA clone, Links
Jumonji, AT rich interactive domain 2 (JARID2)

Human protein-coding gene JARID2. Represented by 310 ESTs from 137 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 172606 - Hs.269059]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_004964.2 JARID2 gene product H. sapiens 100.0 1245
XP_001169890.1 PREDICTED: protein Jumonji isoform 4 P. troglodytes 99.8 1245
XP_002803678.1 PREDICTED: protein Jumonji-like M. mulatta 99.5 1030
NP_068678.1 Jarid2 gene product M. musculus 95.8 1233
NP_001088232.1 jumonji, AT rich interactive domain 2 X. laevis 83.0 1073
NP_001189388.1 protein Jumonji D. rerio 69.5 1318
NP_648324.1 Jumonji, AT rich interactive domain 2 D. melanogaster 47.1 380
Other hits (2 of 27) [Show all]SpeciesId(%)Len(aa)
XP_003897140.1 PREDICTED: protein Jumonji, partial P. anubis 99.3 1249
XP_001493082.2 PREDICTED: protein Jumonji E. caballus 97.4 1244

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: uncharacterized tissue; brain; testis; embryonic tissue; mixed; lung; mouth; muscle; adipose tissue; heart; placenta; kidney; prostate; ovary; vascular; trachea; thymus; thyroid; liver; mammary gland; bone marrow; eye; blood; skin; pancreas; uterus; cervix; intestine; lymph; lymph node; bladder; connective tissue; ascites; epididymis; pineal gland
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 6
Map position: 6p24-p23
UniSTS entry: Chr 6 RH1514 [Map Viewer]
UniSTS entry: Chr 6 RH44612
UniSTS entry: Jarid2
UniSTS entry: Chr 6 SHGC-58184
UniSTS entry: Chr 6 D6S2005
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (11)

BC046184.1 Homo sapiens jumonji, AT rich interactive domain 2, mRNA (cDNA clone IMAGE:5393382), partial cds PA
BC046246.1 Homo sapiens jumonji, AT rich interactive domain 2, mRNA (cDNA clone MGC:47594 IMAGE:4520786), complete cds PA
AK126552.1 Homo sapiens cDNA FLJ44588 fis, clone ASTRO3000154 P
NM_004973.3 Homo sapiens jumonji, AT rich interactive domain 2 (JARID2), transcript variant 1, mRNA PA
AK292861.1 Homo sapiens cDNA FLJ76971 complete cds, highly similar to Homo sapiens Jumonji, AT rich interactive domain 2 (JARID2), mRNA P
AF401209.1 Homo sapiens jumonji-like protein (JMJ) mRNA, partial cds
AK303610.1 Homo sapiens cDNA FLJ53263 complete cds, highly similar to Jumonji protein (Jumonji/ARIDdomain-containing protein 2) P
AK302624.1 Homo sapiens cDNA FLJ53248 complete cds, highly similar to Jumonji protein (Jumonji/ARIDdomain-containing protein 2) P
AK299349.1 Homo sapiens cDNA FLJ55641 complete cds, highly similar to Jumonji protein (Jumonji/ARIDdomain-containing protein 2) P
U57592.1 Human jumonji putative protein (jumonji) mRNA, complete cds P
NM_001267040.1 Homo sapiens jumonji, AT rich interactive domain 2 (JARID2), transcript variant 2, mRNA PA

EST sequences (10 of 310) [Show all sequences]

AA987384.1 Clone IMAGE:1593274 kidney 3' read
AA988945.1 Clone IMAGE:1602813 lung 3' read A
AA910566.1 Clone IMAGE:1518967 uncharacterized tissue 3' read A
AA948578.1 Clone IMAGE:1560459 mixed 3' read
AI082556.1 Clone IMAGE:1660510 mixed 3' read
AI125428.1 Clone IMAGE:1737035 testis 3' read A
AI139676.1 Clone IMAGE:1710134 heart 3' read A
AI147595.1 Clone IMAGE:1696962 uterus 3' read A
BX092583.1 Clone IMAGp998I065710_;_IMAGE:2304461 uncharacterized tissue A
BX093598.1 Clone IMAGp998I04659_;_IMAGE:295371 mixed


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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