> RAR-related orphan receptor C (RORC)
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UGID:170986     UniGene Hs.256022     Homo sapiens (human)   RORC Order cDNA clone, Links
RAR-related orphan receptor C (RORC)

Human protein-coding gene RORC. Represented by 130 ESTs from 59 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 170986 - Hs.256022]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_005051.2 RORC gene product H. sapiens 100.0 517
NP_035411.2 Rorc gene product M. musculus 93.2 515
NP_001032969.1 Protein NHR-23, isoform d C. elegans 76.5 102
NP_788303.1 hormone receptor-like in 46, isoform A D. melanogaster 67.9 162
NP_001103637.1 roraa gene product D. rerio 63.3 455
NP_001088389.1 RAR-related orphan receptor C X. laevis 47.5 399
Other hits (2 of 32) [Show all]SpeciesId(%)Len(aa)
XP_002801824.1 PREDICTED: nuclear receptor ROR-gamma-like isoform 1 M. mulatta 99.5 571
XP_003892665.1 PREDICTED: nuclear receptor ROR-gamma isoform 1 P. anubis 99.4 517

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: thymus; testis; uncharacterized tissue; mixed; liver; lung; intestine; mammary gland; uterus; muscle; pancreas; kidney; pituitary gland; bladder; prostate; brain; adrenal gland; trachea; cervix; stomach; connective tissue; bone; lymph node; thyroid; mouth
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 1
Map position: 1q21
UniSTS entry: Chr 1 RH16275 [Map Viewer]
UniSTS entry: Chr 1 SHGC-34816 [Map Viewer]
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (14)

NM_005060.3 Homo sapiens RAR-related orphan receptor C (RORC), transcript variant 1, mRNA PA
NM_001001523.1 Homo sapiens RAR-related orphan receptor C (RORC), transcript variant 2, mRNA PA
CR457436.1 Homo sapiens full open reading frame cDNA clone RZPDo834C076D for gene RORC, RAR-related orphan receptor C; complete cds, incl. stopcodon P
AK223137.1 Homo sapiens mRNA for RAR-related orphan receptor C isoform a variant, clone: KDN00922 P
BC110571.2 Homo sapiens RAR-related orphan receptor C, mRNA (cDNA clone MGC:129539 IMAGE:40001043), complete cds P
U16997.1 Human orphan receptor ROR gamma mRNA, complete cds P
AK315662.1 Homo sapiens cDNA, FLJ96754, highly similar to Homo sapiens RAR-related orphan receptor C (RORC), mRNA P
BC031554.1 Homo sapiens RAR-related orphan receptor C, mRNA (cDNA clone MGC:34470 IMAGE:5186655), complete cds PA
AK097994.1 Homo sapiens cDNA FLJ40675 fis, clone THYMU2021714, highly similar to NUCLEAR RECEPTOR ROR-GAMMA P
AL834219.1 Homo sapiens mRNA; cDNA DKFZp667A0710 (from clone DKFZp667A0710) PA
AK298460.1 Homo sapiens cDNA FLJ58518 complete cds, highly similar to Nuclear receptor ROR-gamma P
AF075096.1 Homo sapiens full length insert cDNA YR04H02 A
AB307696.1 Homo sapiens NR1F3 mRNA for retinoid-related orphan receptor gamma, complete cds P
HQ692834.1 Homo sapiens RAR-related orphan nuclear receptor variant 2 (NR1F3) mRNA, complete cds P

EST sequences (10 of 130) [Show all sequences]

AA928869.1 Clone IMAGE:1568245 lung 3' read A
AI052192.1 Clone IMAGE:1675273 mixed 3' read
AI076506.1 Clone IMAGE:1674842 mixed 3' read A
BX099100.1 Clone IMAGp998H04395_;_IMAGE:204339 mixed
AI193052.1 Clone IMAGE:1743776 lung 3' read
AI218580.1 Clone IMAGE:1845167 mixed 3' read
CB161467.1 Clone L17N670205n1-34-A10 liver 5' read
CB163262.1 Clone L17N670205n1-22-F06 liver 5' read
CB164525.1 Clone L17N670205n1-48-H07 liver 5' read
CB164602.1 Clone L17N670205n1-40-B07 liver 5' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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