> Chromodomain helicase DNA binding protein 3 (CHD3)
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UGID:135068     UniGene Hs.25601     Homo sapiens (human)   CHD3 Links
Chromodomain helicase DNA binding protein 3 (CHD3)

Human protein-coding gene CHD3. Represented by 697 ESTs from 313 cDNA libraries. Corresponds to 3 reference sequences (different isoforms). [UniGene 135068 - Hs.25601]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001005271.2 CHD3 gene product H. sapiens 100.0 2058
XP_512012.3 PREDICTED: chromodomain-helicase-DNA-binding protein 3 isoform 3 P. troglodytes 100.0 2057
XP_003912333.1 PREDICTED: chromodomain-helicase-DNA-binding protein 3 isoform 1 P. anubis 99.9 1999
XP_001111066.1 PREDICTED: chromodomain-helicase-DNA-binding protein 3-like isoform 2 M. mulatta 99.7 1980
XP_003132000.1 PREDICTED: chromodomain-helicase-DNA-binding protein 3 isoform 2 S. scrofa 99.5 2001
XP_536627.3 PREDICTED: LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding protein 3 C. lupus familiaris 99.5 1998
NP_666131.3 chromodomain helicase DNA binding protein 3 M. musculus 99.1 2054
XP_696641.3 PREDICTED: chromodomain-helicase-DNA-binding protein 3 D. rerio 86.7 2054
NP_001080504.1 chromodomain helicase DNA binding protein 4 X. laevis 81.3 1850
NP_001014591.1 Mi-2, isoform B D. melanogaster 70.5 1938
NP_504523.1 Protein LET-418 C. elegans 62.3 1708
XP_001703254.1 chromodomain-helicase-DNA-binding protein C. reinhardtii 58.7 441
NP_001190884.1 putative chromatin remodeling factor A. thaliana 56.9 515
NP_014948.1 Isw2p S. cerevisiae 54.3 385
XP_956548.2 chromatin remodelling complex ATPase chain ISW1 N. crassa 52.7 357
Other hits (2 of 59) [Show all]SpeciesId(%)Len(aa)
XP_003583617.1 PREDICTED: LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding protein 3 B. taurus 99.5 2001
XP_002719030.1 PREDICTED: chromodomain helicase DNA binding protein 3-like O. cuniculus 99.2 1891

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; lung; uncharacterized tissue; prostate; lymph node; heart; eye; uterus; embryonic tissue; adrenal gland; vascular; thyroid; thymus; intestine; mouth; mammary gland; pancreas; testis; lymph; blood; liver; mixed; nerve; pituitary gland; skin; kidney; larynx; muscle; pharynx; bladder; trachea; placenta; bone; stomach; ovary; connective tissue; cervix; adipose tissue; umbilical cord; esophagus; spleen; ganglia
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 17
Map position: 17p13.1
UniSTS entry: Chr 17 RH12021
UniSTS entry: Chr 17 WI-22609 [Map Viewer]
UniSTS entry: Chr 17 WI-18497 [Map Viewer]
UniSTS entry: Chr 17 RH47412
UniSTS entry: Chr 17 CHD3_7231
UniSTS entry: Chr 4 ha2919
UniSTS entry: Chr 1 PMC99947P2
UniSTS entry: Chr X DXS7495 [Map Viewer]
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (12)

U91543.1 Homo sapiens zinc-finger helicase (hZFH) mRNA, complete cds P
AK125928.1 Homo sapiens cDNA FLJ43940 fis, clone TESTI4014175, highly similar to Chromodomain helicase-DNA-binding protein 3 (EC 3.6.1.-) P
NM_001005273.2 Homo sapiens chromodomain helicase DNA binding protein 3 (CHD3), transcript variant 1, mRNA PA
NM_001005271.2 Homo sapiens chromodomain helicase DNA binding protein 3 (CHD3), transcript variant 3, mRNA PA
NM_005852.3 Homo sapiens chromodomain helicase DNA binding protein 3 (CHD3), transcript variant 2, mRNA PA
BC110648.1 Homo sapiens chromodomain helicase DNA binding protein 3, mRNA (cDNA clone IMAGE:4536556), partial cds PA
AK308362.1 Homo sapiens cDNA, FLJ98310 P
AK096555.1 Homo sapiens cDNA FLJ39236 fis, clone OCBBF2007892, highly similar to Homo sapiens zinc-finger helicase (hZFH) mRNA P
AK296937.1 Homo sapiens cDNA FLJ59330 complete cds, highly similar to Chromodomain helicase-DNA-binding protein 3 (EC 3.6.1.-) P
AK296725.1 Homo sapiens cDNA FLJ58804 complete cds, highly similar to Chromodomain helicase-DNA-binding protein 3 (EC 3.6.1.-) P
AF064844.1 Homo sapiens repeat region, complete sequence P
U08379.1 Human Mi-2 autoantigen 240 kDa protein mRNA, partial cds P

EST sequences (10 of 697) [Show all sequences]

AA995172.1 Clone IMAGE:1635058 kidney 3' read
AI076877.1 Clone IMAGE:1670278 brain 3' read
AI080409.1 Clone IMAGE:1662760 mixed 3' read
AI096707.1 Clone IMAGE:1707463 heart 3' read
CB051015.1 Clone IMAGE:3289476 prostate 3' read A
AI184079.1 Clone IMAGE:1739899 lung 3' read A
AI214097.1 Clone IMAGE:1956829 brain 3' read
AI215717.1 Clone IMAGE:1884142 lung 3' read
T06785.1 Clone HFBDY76 brain
CB155191.1 Clone B2N807043-13-C09 brain 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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