> SUZ RNA binding domain containing 1 (SZRD1)
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UGID:170017     UniGene Hs.252967     Homo sapiens (human)   SZRD1 Order cDNA clone, Links
SUZ RNA binding domain containing 1 (SZRD1)

Human protein-coding gene SZRD1. Represented by 1130 ESTs from 379 cDNA libraries. Corresponds to 6 reference sequences (different isoforms). [UniGene 170017 - Hs.252967]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_003891241.1 PREDICTED: UPF0485 protein C1orf144 homolog P. anubis 100.0 151
XP_003949351.1 PREDICTED: UPF0485 protein C1orf144 homolog P. troglodytes 100.0 151
NP_001108072.1 SZRD1 gene product H. sapiens 100.0 151
XP_001086708.2 PREDICTED: UPF0485 protein C1orf144-like, partial M. mulatta 100.0 144
NP_001020779.1 Szrd1 gene product M. musculus 97.4 151
NP_001085367.1 SUZ domain-containing protein 1 X. laevis 82.2 151
NP_001025247.1 szrd1 gene product D. rerio 69.4 160
Other hits (2 of 18) [Show all]SpeciesId(%)Len(aa)
XP_852001.2 PREDICTED: UPF0485 protein C1orf144 homolog isoform 1 C. lupus familiaris 98.7 151
XP_002722379.1 PREDICTED: putative MAPK activating protein PM20,PM21 O. cuniculus 98.7 151

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; skin; lung; embryonic tissue; uncharacterized tissue; testis; uterus; placenta; kidney; mixed; eye; thymus; liver; trachea; pancreas; blood; mouth; intestine; ovary; prostate; thyroid; spleen; adrenal gland; connective tissue; vascular; heart; bone; ascites; lymph node; mammary gland; muscle; bladder; esophagus; tonsil; cervix; stomach; lymph; parathyroid; bone marrow; umbilical cord; adipose tissue; amniotic fluid; nerve; pituitary gland; salivary gland
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 1
Map position: 1p36.13
UniSTS entry: Chr 16 RH80502
UniSTS entry: Chr 16 RH66504
UniSTS entry: Chr 1 RH70040
UniSTS entry: Chr 1 SHGC-74284 [Map Viewer]
UniSTS entry: Chr 1 SHGC-74280 [Map Viewer]
UniSTS entry: Chr 1 STS-N57662
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (23)

AJ295987.1 Homo sapiens mRNA for hypothetical protein (ORF1), clone Telethon(Italy_B41)_Strait01448_FL406 P
AL050028.1 Homo sapiens mRNA; cDNA DKFZp566C0424 (from clone DKFZp566C0424); partial cds PA
AB097046.1 Homo sapiens mRNA for putative MAPK activating protein, complete cds, clone: PM22 PA
AB097045.1 Homo sapiens mRNA for putative MAPK activating protein, complete cds, clone: PM21 PA
AB097044.1 Homo sapiens mRNA for putative MAPK activating protein, complete cds, clone: PM20 PA
AB097043.1 Homo sapiens mRNA for putative MAPK activating protein, complete cds, clone: PM19 PA
AB097042.1 Homo sapiens mRNA for putative MAPK activating protein, complete cds, clone: PM18 PA
BX640985.1 Homo sapiens mRNA; cDNA DKFZp686E15252 (from clone DKFZp686E15252) A
BC065538.1 Homo sapiens chromosome 1 open reading frame 144, mRNA (cDNA clone MGC:70432 IMAGE:6053254), complete cds PA
AK308787.1 Homo sapiens cDNA, FLJ98828
BC023988.1 Homo sapiens chromosome 1 open reading frame 144, mRNA (cDNA clone MGC:24215 IMAGE:3825796), complete cds PA
NM_001114600.2 Homo sapiens SUZ RNA binding domain containing 1 (SZRD1), transcript variant 1, mRNA P
AK098272.1 Homo sapiens cDNA FLJ40953 fis, clone UTERU2010417
AL832937.1 Homo sapiens mRNA; cDNA DKFZp666F1410 (from clone DKFZp666F1410) A
AK298576.1 Homo sapiens cDNA FLJ51932 complete cds P
AK297926.1 Homo sapiens cDNA FLJ54298 complete cds P
BC010631.1 Homo sapiens chromosome 1 open reading frame 144, mRNA (cDNA clone IMAGE:3867552), with apparent retained intron PA
AK316205.1 Homo sapiens cDNA, FLJ79104 complete cds P
NM_001271869.1 Homo sapiens SUZ RNA binding domain containing 1 (SZRD1), transcript variant 3, mRNA
NR_073502.1 Homo sapiens SUZ RNA binding domain containing 1 (SZRD1), transcript variant 2, non-coding RNA
NR_073503.1 Homo sapiens SUZ RNA binding domain containing 1 (SZRD1), transcript variant 4, non-coding RNA
NR_073501.1 Homo sapiens SUZ RNA binding domain containing 1 (SZRD1), transcript variant 6, non-coding RNA
NR_073500.1 Homo sapiens SUZ RNA binding domain containing 1 (SZRD1), transcript variant 5, non-coding RNA

EST sequences (10 of 1130) [Show all sequences]

AI032055.1 Clone IMAGE:1651990 mixed 3' read
AI057585.1 Clone IMAGE:1667432 parathyroid 3' read
AI073354.1 Clone IMAGE:1679392 skin 3' read A
AI074301.1 Clone IMAGE:1679317 skin 3' read A
AI074942.1 Clone IMAGE:1667118 skin 3' read
AI095425.1 Clone IMAGE:1696684 uterus 3' read A
AI096372.1 Clone IMAGE:1707486 heart 3' read A
AI131252.1 Clone IMAGE:1709782 heart 3' read A
AI167973.1 Clone IMAGE:1682434 skin 3' read
BX116832.1 Clone IMAGp998L19734_;_IMAGE:324258 skin


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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