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SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 (SMARCD2)
Human protein-coding gene SMARCD2. Represented by 448 ESTs from 223 cDNA libraries. Corresponds to reference sequence NM_001098426.1. [UniGene 169701 - Hs.250581]
SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
| Best Hits and Hits from model organisms | Species | Id(%) | Len(aa) |
|
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PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 isoform 1 |
P. anubis |
100.0 |
530 |
|
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PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 isoform 7 |
P. troglodytes |
100.0 |
530 |
|
|
SMARCD2 gene product |
H. sapiens |
100.0 |
530 |
|
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PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2-like |
M. mulatta |
100.0 |
482 |
|
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PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 isoform 2 |
C. lupus familiaris |
99.8 |
530 |
|
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PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2-like isoform 2 |
E. caballus |
99.8 |
530 |
|
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SMARCD2 gene product |
S. scrofa |
99.8 |
530 |
|
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SMARCD2 gene product |
B. taurus |
99.8 |
530 |
|
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PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 |
O. aries |
99.6 |
481 |
|
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Smarcd2 gene product |
M. musculus |
99.2 |
530 |
|
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PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 |
D. rerio |
88.0 |
490 |
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SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 |
X. laevis |
87.7 |
463 |
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brahma associated protein 60kD |
D. melanogaster |
71.4 |
497 |
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Protein HAM-3 |
C. elegans |
60.5 |
440 |
| Other hits (2 of 30) [Show all] | Species | Id(%) | Len(aa) |
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PREDICTED: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2-like |
O. cuniculus |
99.4 |
531 |
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Smarcd2 gene product |
R. norvegicus |
99.2 |
530 |
GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
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EST Profile: | Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this] |
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GEO Profiles: |
Experimental gene expression data (Gene Expression Omnibus). |
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cDNA Sources: |
lung; uncharacterized tissue; brain; prostate; uterus; eye; mammary gland; embryonic tissue; thyroid; thymus; epididymis; bone; spleen; larynx; blood; heart; liver; testis; intestine; pancreas; placenta; lymph node; bladder; amniotic fluid; skin; kidney; trachea; lymph; tonsil; ascites; ovary; stomach; mouth; mixed; bone marrow; pituitary gland; connective tissue; adrenal gland; esophagus; salivary gland; muscle |
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.
mRNA sequences (10)
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AK025917.1 |
Homo sapiens cDNA: FLJ22264 fis, clone HRC03066, highly similar to AF113019 Homo sapiens PRO2451 mRNA |
PA |
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NM_001098426.1 |
Homo sapiens SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 (SMARCD2), mRNA |
P |
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BC142963.1 |
Homo sapiens SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2, mRNA (cDNA clone MGC:167047 IMAGE:8860380), complete cds |
PA |
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BC018953.2 |
Homo sapiens SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2, mRNA (cDNA clone IMAGE:4303183), partial cds |
PA |
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AK307944.1 |
Homo sapiens cDNA, FLJ97892 |
P |
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AK300939.1 |
Homo sapiens cDNA FLJ59246 complete cds, highly similar to Rattus norvegicus SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 (Smarcd2), mRNA |
P |
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AK303951.1 |
Homo sapiens cDNA FLJ53269 complete cds, highly similar to SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 |
P |
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U66618.1 |
Human SWI/SNF complex 60 KDa subunit (BAF60b) mRNA, complete cds |
P |
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AF113019.1 |
Homo sapiens PRO2451 mRNA, complete cds |
PA |
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BC136322.1 |
Homo sapiens SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2, mRNA (cDNA clone MGC:167932 IMAGE:9020309), complete cds |
P |
EST sequences (10 of 448) [Show all sequences]
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AI039302.1 |
Clone IMAGE:1658155 |
embryonic tissue |
3' read |
A |
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AI040190.1 |
Clone IMAGE:1659018 |
embryonic tissue |
3' read |
A |
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AI076940.1 |
Clone IMAGE:1637918 |
mammary gland |
3' read |
A |
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AI089964.1 |
Clone IMAGE:1687358 |
brain |
3' read |
A |
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AI123801.1 |
Clone IMAGE:1651282 |
mixed |
3' read |
A |
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AI222903.1 |
Clone IMAGE:1883278 |
lung |
3' read |
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AI363801.1 |
Clone IMAGE:1987815 |
uterus |
3' read |
A |
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AI368655.1 |
Clone IMAGE:2016445 |
brain |
3' read |
A |
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AI392720.1 |
Clone IMAGE:2109620 |
uncharacterized tissue |
3' read |
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AI392962.1 |
Clone IMAGE:2109520 |
uncharacterized tissue |
3' read |
A |
Key to Symbols
P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria
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