> Suppressor of Ty 6 homolog (S. cerevisiae) (SUPT6H)
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UGID:169669     UniGene Hs.250429     Homo sapiens (human)   SUPT6H Order cDNA clone, Links
Suppressor of Ty 6 homolog (S. cerevisiae) (SUPT6H)

Human protein-coding gene SUPT6H. Represented by 519 ESTs from 285 cDNA libraries. Corresponds to reference sequence NM_003170.3. [UniGene 169669 - Hs.250429]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_003161.2 SUPT6H gene product H. sapiens 100.0 1725
XP_003912584.1 PREDICTED: transcription elongation factor SPT6 P. anubis 100.0 1684
XP_001106850.2 PREDICTED: transcription elongation factor SPT6-like M. mulatta 100.0 1669
XP_001143115.2 PREDICTED: transcription elongation factor SPT6 isoform 5 P. troglodytes 99.9 1725
XP_537747.2 PREDICTED: transcription elongation factor SPT6 isoform 1 C. lupus familiaris 99.9 1725
XP_001504206.1 PREDICTED: transcription elongation factor SPT6 E. caballus 99.9 1725
NP_001180055.1 transcription elongation factor SPT6 B. taurus 99.7 1725
NP_033323.2 Supt6 gene product M. musculus 99.1 1725
NP_660094.1 supt6h gene product D. rerio 87.4 1725
NP_497969.1 Protein EMB-5 C. elegans 60.8 395
NP_651962.2 Spt6 D. melanogaster 58.0 1677
Other hits (2 of 28) [Show all]SpeciesId(%)Len(aa)
XP_004012552.1 PREDICTED: LOW QUALITY PROTEIN: transcription elongation factor SPT6 O. aries 99.5 1716
NP_001178749.1 transcription elongation factor SPT6 R. norvegicus 99.3 1725

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; lung; intestine; kidney; trachea; thymus; lymph; umbilical cord; eye; testis; spleen; pancreas; amniotic fluid; pharynx; embryonic tissue; uncharacterized tissue; skin; mammary gland; salivary gland; placenta; cervix; uterus; prostate; connective tissue; lymph node; pituitary gland; liver; mixed; blood; mouth; bone marrow; thyroid; stomach; epididymis; larynx; parathyroid; ascites; heart; bone; ovary; muscle; vascular
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 17
Map position: 17q11.2
UniSTS entry: Chr 17 RH71444
UniSTS entry: Chr 17 RH67050
UniSTS entry: Chr 17 RH25380
UniSTS entry: Chr 17 MARC_3295-3296:991936968:1
UniSTS entry: Chr 1 D8S2279
UniSTS entry: Chr 1 GDB:434012
UniSTS entry: Chr 1 D11S3114
UniSTS entry: Chr 1 L17676
UniSTS entry: Chr 17 ksks304
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (15)

AF070532.1 Homo sapiens clones 24605 and 24699 emb-5 mRNA, partial cds PA
AK126585.1 Homo sapiens cDNA FLJ44622 fis, clone BRACE2017359, highly similar to Mus musculus suppressor of Ty 6 homolog (S. cerevisiae) (Supt6h) P
BC073963.1 Homo sapiens suppressor of Ty 6 homolog (S. cerevisiae), mRNA (cDNA clone IMAGE:5587330), complete cds PA
D79984.1 Homo sapiens KIAA0162 mRNA, partial cds P
NM_003170.3 Homo sapiens suppressor of Ty 6 homolog (S. cerevisiae) (SUPT6H), mRNA PA
BC003696.1 Homo sapiens suppressor of Ty 6 homolog (S. cerevisiae), mRNA (cDNA clone IMAGE:3456230), partial cds PA
BC003692.1 Homo sapiens, Similar to suppressor of Ty (S.cerevisiae) 6 homolog, clone IMAGE:3454122, mRNA, partial cds PA
BC150268.1 Homo sapiens suppressor of Ty 6 homolog (S. cerevisiae), mRNA (cDNA clone MGC:166860 IMAGE:9007230), complete cds PA
BC017105.1 Homo sapiens suppressor of Ty 6 homolog (S. cerevisiae), mRNA (cDNA clone IMAGE:3533805), partial cds PA
BC136522.1 Homo sapiens suppressor of Ty 6 homolog (S. cerevisiae), mRNA (cDNA clone MGC:168135 IMAGE:9020512), complete cds P
BC136524.1 Homo sapiens suppressor of Ty 6 homolog (S. cerevisiae), mRNA (cDNA clone MGC:168137 IMAGE:9020514), complete cds P
BC033074.1 Homo sapiens suppressor of Ty 6 homolog (S. cerevisiae), mRNA (cDNA clone IMAGE:4877063), complete cds PA
AL833607.1 Homo sapiens mRNA; cDNA DKFZp686M1767 (from clone DKFZp686M1767) PA
U38623.1 Human chromatin structural protein (SPTH6) mRNA, partial cds P
U38658.1 Human chromatin structural protein (SPTH6) mRNA, partial cds P

EST sequences (10 of 519) [Show all sequences]

AA972981.1 Clone IMAGE:1578411 mixed 3' read PA
AA987766.1 Clone IMAGE:1601686 lung 3' read
AA927897.1 Clone IMAGE:1541393 mixed 3' read P
AI089571.1 Clone IMAGE:1695515 uterus 3' read A
AI127150.1 Clone IMAGE:1708188 heart 3' read P
R23555.1 Clone IMAGE:34372 brain 5' read P
BX094633.1 Clone IMAGp998N1172_;_IMAGE:22991 brain A
AI167732.1 Clone IMAGE:1682567 skin 3' read A
CB160981.1 Clone L18POOL1n1-24-B12 liver 5' read
CB123617.1 Clone L12JSHC0-1-H01 liver 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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