> SUB1 homolog (S. cerevisiae) (SUB1)
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UGID:166390     UniGene Hs.229641     Homo sapiens (human)   SUB1 Order cDNA clone, Links
SUB1 homolog (S. cerevisiae) (SUB1)

Human protein-coding gene SUB1. Represented by 1291 ESTs from 326 cDNA libraries. Corresponds to reference sequence NM_006713.3. [UniGene 166390 - Hs.229641]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_001154452.1 PREDICTED: activated RNA polymerase II transcriptional coactivator p15 isoform 2 P. troglodytes 100.0 151
XP_001089347.2 PREDICTED: activated RNA polymerase II transcriptional coactivator p15 isoform 1 M. mulatta 100.0 126
NP_006704.3 SUB1 gene product H. sapiens 100.0 126
XP_536425.3 PREDICTED: activated RNA polymerase II transcriptional coactivator p15-like C. lupus familiaris 100.0 126
XP_001500513.1 PREDICTED: activated RNA polymerase II transcriptional coactivator p15-like E. caballus 100.0 126
XP_003133324.1 PREDICTED: activated RNA polymerase II transcriptional coactivator p15-like S. scrofa 100.0 126
NP_001098877.1 SUB1 gene product B. taurus 100.0 126
XP_004017116.1 PREDICTED: activated RNA polymerase II transcriptional coactivator p15 O. aries 100.0 126
NP_035424.1 Sub1 gene product M. musculus 95.3 126
NP_001018376.1 sub1a gene product D. rerio 82.9 122
NP_001084564.1 SUB1 homolog X. laevis 79.7 127
Other hits (2 of 13) [Show all]SpeciesId(%)Len(aa)
XP_002714157.1 PREDICTED: activated RNA polymerase II transcription cofactor 4 O. cuniculus 99.2 126
XP_003908747.1 PREDICTED: activated RNA polymerase II transcriptional coactivator p15-like P. anubis 98.1 157

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; mixed; testis; uncharacterized tissue; placenta; uterus; mouth; liver; embryonic tissue; pancreas; salivary gland; kidney; bone marrow; connective tissue; mammary gland; prostate; skin; pharynx; blood; bone; muscle; lung; ovary; eye; heart; trachea; intestine; spleen; ear; thymus; vascular; lymph node; cervix; bladder; adrenal gland; stomach; larynx; parathyroid; ascites; thyroid; pituitary gland; amniotic fluid
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 5
Map position: 5p13.3
UniSTS entry: Chr 16 RH41222
UniSTS entry: Chr 16 SGC32812 [Map Viewer]
UniSTS entry: Chr 5 RH69265
UniSTS entry: Chr 5 WI-16354 [Map Viewer]
UniSTS entry: Chr 5 RH102055
UniSTS entry: Chr 15 fb33b12.x1
UniSTS entry: Chr 1 D10S275
UniSTS entry: Chr 1 D10S16
UniSTS entry: Chr 5 RH120609
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (17)

BX537584.1 Homo sapiens mRNA; cDNA DKFZp686D10119 (from clone DKFZp686D10119) A
AK125970.1 Homo sapiens cDNA FLJ43982 fis, clone TESTI4018859
NM_006713.3 Homo sapiens SUB1 homolog (S. cerevisiae) (SUB1), mRNA PA
BC063402.1 Homo sapiens SUB1 homolog (S. cerevisiae), mRNA (cDNA clone IMAGE:5193277) A
CR456902.1 Homo sapiens full open reading frame cDNA clone RZPDo834A057D for gene PC4, activated RNA polymerase II transcription cofactor 4; complete cds, incl. stopcodon P
BC071655.1 Homo sapiens SUB1 homolog (S. cerevisiae), mRNA (cDNA clone IMAGE:5532707) PA
AB209285.1 Homo sapiens mRNA for activated RNA polymerase II transcription cofactor 4 variant protein P
BC105972.1 Homo sapiens SUB1 homolog (S. cerevisiae), mRNA (cDNA clone MGC:102747 IMAGE:3907729), complete cds PA
BC010537.1 Homo sapiens SUB1 homolog (S. cerevisiae), mRNA (cDNA clone MGC:17295 IMAGE:3457167), complete cds PA
BC009610.1 Homo sapiens SUB1 homolog (S. cerevisiae), mRNA (cDNA clone MGC:14781 IMAGE:4297490), complete cds PA
BC018189.1 Homo sapiens SUB1 homolog (S. cerevisiae), mRNA (cDNA clone MGC:21503 IMAGE:3881373), complete cds PA
BC022339.1 Homo sapiens SUB1 homolog (S. cerevisiae), mRNA (cDNA clone MGC:23773 IMAGE:4134117), complete cds PA
AK311754.1 Homo sapiens cDNA, FLJ92014, highly similar to Homo sapiens SUB1 homolog (S. cerevisiae) (SUB1), mRNA P
AK307268.1 Homo sapiens cDNA, FLJ97216 P
AK294124.1 Homo sapiens cDNA FLJ51816 complete cds, highly similar to Activated RNA polymerase II transcriptional coactivator p15 P
X79805.1 H.sapiens mRNA for PC4 and p15 P
U12979.1 Human transcriptional coactivator PC4 mRNA, complete cds P

EST sequences (10 of 1291) [Show all sequences]

AA960855.1 Clone IMAGE:1564611 mixed 3' read A
AA973953.1 Clone IMAGE:1586131 uncharacterized tissue 3' read A
AA995662.1 Clone IMAGE:1606344 kidney 3' read A
AA907901.1 Clone IMAGE:1520298 kidney 3' read P
AI033213.1 Clone IMAGE:1654844 mixed 3' read
AI082738.1 Clone IMAGE:1652807 mixed 3' read
CB053449.1 Clone IMAGE:3290923 uncharacterized tissue 3' read P
CB053450.1 Clone IMAGE:3290923 uncharacterized tissue 5' read P
BX107729.1 Clone IMAGp998D111724_;_IMAGE:704218 lymph node
AI188446.1 Clone IMAGE:1723675 placenta 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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