> ATP-binding cassette, sub-family A (ABC1), member 13 (ABCA13)
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UGID:166035     UniGene Hs.226568     Homo sapiens (human)   ABCA13 Links
ATP-binding cassette, sub-family A (ABC1), member 13 (ABCA13)

Human protein-coding gene ABCA13. Represented by 73 ESTs from 23 cDNA libraries. EST representation biased toward leukemia; adult. Corresponds to reference sequence NM_152701.3. [UniGene 166035 - Hs.226568]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_689914.2 ABCA13 gene product H. sapiens 100.0 5057
NP_839990.2 Abca13 gene product M. musculus 73.1 5028
XP_683123.5 PREDICTED: retinal-specific ATP-binding cassette transporter D. rerio 51.4 1325
NP_001089022.1 ATP-binding cassette, sub-family A (ABC1), member 4 X. laevis 50.0 1367
NP_001031526.1 ABC transporter A family member 1 A. thaliana 47.7 258
NP_503175.1 Protein ABT-4 C. elegans 45.5 198
Other hits (2 of 44) [Show all]SpeciesId(%)Len(aa)
XP_003318474.1 PREDICTED: ATP-binding cassette sub-family A member 13 P. troglodytes 98.7 4390
XP_003896044.1 PREDICTED: ATP-binding cassette sub-family A member 13-like P. anubis 95.1 1502

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
Restricted Expression: leukemia [show more like this]
adult [show more like this]
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: blood; uncharacterized tissue; trachea; mouth; intestine; liver; mixed; thymus; testis; pharynx
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 7
Map position: 7p12.3
UniSTS entry: Chr 1 D11S3114
UniSTS entry: Chr 7 SHGC-154751
UniSTS entry: Chr 1 D8S2278
UniSTS entry: Chr 1 sY3084
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (16)

AF501281.1 Homo sapiens ATP binding cassette transporter A13 (ABCA13) mRNA, partial cds P
AY204751.1 Homo sapiens ABC A13 mRNA, complete cds PA
BX647560.1 Homo sapiens mRNA; cDNA DKFZp313D2411 (from clone DKFZp313D2411) PA
BX647273.1 Homo sapiens mRNA; cDNA DKFZp781A0836 (from clone DKFZp781A0836)
AK128570.1 Homo sapiens cDNA FLJ46729 fis, clone TRACH3019370 P
AK128516.1 Homo sapiens cDNA FLJ46673 fis, clone TRACH3009061, weakly similar to ATP-binding cassette, sub-family A, member 1 P
AK126220.1 Homo sapiens cDNA FLJ44232 fis, clone THYMU3006811, weakly similar to Homo sapiens ATP-binding cassette, sub-family A (ABC1), member 7 (ABCA7) P
BC062666.1 Homo sapiens ATP-binding cassette, sub-family A (ABC1), member 13, mRNA (cDNA clone IMAGE:6499473) PA
AK131360.1 Homo sapiens cDNA FLJ16398 fis, clone TRACH3000420 P
AK091270.1 Homo sapiens cDNA FLJ33951 fis, clone CTONG2018483, weakly similar to ATP-BINDING CASSETTE, SUB-FAMILY A, MEMBER 1 P
AK091195.1 Homo sapiens cDNA FLJ33876 fis, clone CTONG2007009 P
NM_152701.3 Homo sapiens ATP-binding cassette, sub-family A (ABC1), member 13 (ABCA13), mRNA PA
JF913492.1 Homo sapiens ATP-binding cassette sub-family A member 13 variant 3 (ABCA13) mRNA, complete cds, alternatively spliced
JF913488.1 Homo sapiens ATP-binding cassette sub-family A member 13 (ABCA13) mRNA, complete cds, alternatively spliced
JF913491.1 Homo sapiens ATP-binding cassette sub-family A member 13 variant 2 (ABCA13) mRNA, complete cds, alternatively spliced
JF913489.1 Homo sapiens ATP-binding cassette sub-family A member 13 (ABCA13) mRNA, exons 31 through 35 and partial cds, alternatively spliced

EST sequences (10 of 73) [Show all sequences]

AI732440.1 Clone IMAGE:510556 intestine 3' read A
AI733755.1 Clone IMAGE:510556 intestine 5' read
BX644621.1 Clone DKFZp781P1433 uncharacterized tissue 5' read P
AW468640.1 Clone IMAGE:2921713 blood 3' read A
CD637937.1 uncharacterized tissue P
CD637938.1 uncharacterized tissue P
CD637939.1 uncharacterized tissue
CD637940.1 uncharacterized tissue P
CD637941.1 uncharacterized tissue P
CD637942.1 uncharacterized tissue P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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