CDC42 small effector 1 (CDC42SE1)

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UGID:134380 UniGene Hs.22065 Homo sapiens (human) CDC42SE1

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CDC42 small effector 1 (CDC42SE1)

Human protein-coding gene CDC42SE1. Represented by 416 ESTs from 239 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 134380 - Hs.22065]

SELECTED PROTEIN SIMILARITIES

Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.

Best Hits and Hits from model organisms		Species	Id(%)	Len(aa)
XP_002801812.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	PREDICTED: CDC42 small effector protein 1-like	M. mulatta	100.0	78
XP_003892656.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	PREDICTED: CDC42 small effector protein 1	P. anubis	100.0	78
XP_001166242.2 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	PREDICTED: CDC42 small effector protein 1 isoform 1	P. troglodytes	100.0	78
NP_001033796.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	CDC42SE1 gene product	H. sapiens	100.0	78
NP_001034132.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	CDC42SE1 gene product	C. lupus familiaris	100.0	78
XP_003365081.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	PREDICTED: CDC42 small effector protein 1-like	E. caballus	100.0	78
NP_001177122.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	CDC42SE1 gene product	S. scrofa	100.0	78
NP_001030284.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	CDC42SE1 gene product	B. taurus	100.0	78
XP_004002520.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	PREDICTED: CDC42 small effector protein 1	O. aries	100.0	78
XP_002715617.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	PREDICTED: CDC42 small effector 1	O. cuniculus	100.0	78
NP_765983.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	Cdc42se1 gene product	M. musculus	98.8	79
Other hits (		Species	Id(%)	Len(aa)
NP_001034133.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	Cdc42se1 gene product	R. norvegicus	98.7	78
XP_001365960.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	PREDICTED: CDC42 small effector protein 1-like	M. domestica	98.7	78

GENE EXPRESSION

Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.

	EST Profile:	Approximate expression patterns inferred from EST sources. [Show more entries with profiles like this]
	GEO Profiles:	Experimental gene expression data (Gene Expression Omnibus).
	cDNA Sources:	brain; adrenal gland; larynx; pharynx; uterus; placenta; mixed; connective tissue; esophagus; uncharacterized tissue; mammary gland; lung; amniotic fluid; eye; lymph; blood; thyroid; heart; spleen; thymus; skin; cervix; mouth; prostate; intestine; pancreas; liver; embryonic tissue; kidney; vascular; testis; stomach; bladder; bone; lymph node; muscle; spinal cord; ascites; ovary; trachea; epididymis; umbilical cord; parathyroid

MAPPING POSITION

Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.

Chromosome:	1
Map position:	1q21.3
UniSTS entry:	Chr 1	WI-17680	[Map Viewer]
UniSTS entry:	Chr 1	RH93368
UniSTS entry:	Chr 1	RH69823	[Map Viewer]
UniSTS entry:		MARC_16118-16119:1018032271:1
UniSTS entry:	Chr 1	RH70731	[Map Viewer]

SEQUENCES

Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (7)

NM_020239.3	Homo sapiens CDC42 small effector 1 (CDC42SE1), transcript variant 2, mRNA	PA
AF187845.2	Homo sapiens small protein effector 1 of Cdc42 mRNA, complete cds	P
AF286041.1	Homo sapiens CDC42-binding protein SCIP1 mRNA, partial cds	P
NM_001038707.1	Homo sapiens CDC42 small effector 1 (CDC42SE1), transcript variant 1, mRNA	PA
AF286592.1	Homo sapiens signaling molecule SPEC1 beta mRNA, complete cds
BC012796.2	Homo sapiens CDC42 small effector 1, mRNA (cDNA clone MGC:16904 IMAGE:3924598), complete cds	PA
BC041604.1	Homo sapiens CDC42 small effector 1, mRNA (cDNA clone MGC:52167 IMAGE:5473010), complete cds	PA

EST sequences (10 of 416) [Show all sequences]

R16883.1	Clone IMAGE:129698	mixed	3' read
R16935.1	Clone IMAGE:129698	mixed	5' read
AI017497.1	Clone IMAGE:1627665	mixed	3' read
AI034256.1	Clone IMAGE:1646919	parathyroid	3' read	A
AA948329.1	Clone IMAGE:1589353	kidney	3' read	A
AI075430.1	Clone IMAGE:1681862	skin	3' read
CB051241.1	Clone IMAGE:3289356	prostate	3' read
AI184053.1	Clone IMAGE:1739178	lung	3' read	A
AI277710.1	Clone IMAGE:1879014	mixed	3' read	A
AA897434.1	Clone IMAGE:1466270	mixed	3' read	A

Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria