> Structural maintenance of chromosomes 1A (SMC1A)
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UGID:164373     UniGene Hs.211602     Homo sapiens (human)   SMC1A Order cDNA clone, Links
Structural maintenance of chromosomes 1A (SMC1A)

Human protein-coding gene SMC1A. Represented by 549 ESTs from 255 cDNA libraries. Corresponds to reference sequence NM_006306.2. [UniGene 164373 - Hs.211602]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_062684.2 Smc1a gene product M. musculus 100.0 1232
NP_006297.2 SMC1A gene product H. sapiens 100.0 1232
XP_538049.3 PREDICTED: structural maintenance of chromosomes protein 1A C. lupus familiaris 100.0 1232
XP_003135172.3 PREDICTED: structural maintenance of chromosomes protein 1A-like S. scrofa 100.0 1232
NP_777039.1 SMC1A gene product B. taurus 100.0 1232
XP_004022116.1 PREDICTED: structural maintenance of chromosomes protein 1A O. aries 100.0 1232
NP_113871.1 Smc1a gene product R. norvegicus 99.9 1232
XP_001091228.1 PREDICTED: structural maintenance of chromosomes protein 1A M. mulatta 99.9 1195
XP_003954052.1 PREDICTED: LOW QUALITY PROTEIN: structural maintenance of chromosomes protein 1A P. troglodytes 99.9 1193
XP_002720089.1 PREDICTED: structural maintenance of chromosomes 1A O. cuniculus 99.8 1167
NP_001080490.1 structural maintenance of chromosomes 1A X. laevis 96.8 1231
NP_997975.2 structural maintenance of chromosomes 1A, like D. rerio 93.6 1232
NP_001040658.2 Protein HIM-1, isoform a C. elegans 58.3 1244
NP_651211.2 SMC1 D. melanogaster 58.1 1212
XP_961409.2 hypothetical protein NCU01323 N. crassa 53.3 244
XP_001700607.1 structural maintenance of chromosomes protein 1 C. reinhardtii 50.0 208
NP_001030859.1 structural maintenance of chromosomes 1 A. thaliana 49.8 242
NP_116647.1 cohesin subunit SMC1 S. cerevisiae 45.7 185
Other hits (2 of 47) [Show all]SpeciesId(%)Len(aa)
XP_003917806.1 PREDICTED: structural maintenance of chromosomes protein 1A-like P. anubis 99.1 898
XP_001362224.1 PREDICTED: structural maintenance of chromosomes protein 1A-like M. domestica 98.9 1232

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; liver; uncharacterized tissue; testis; adrenal gland; mammary gland; uterus; lymph node; kidney; cervix; blood; pancreas; eye; embryonic tissue; thymus; mixed; bone marrow; ear; skin; esophagus; lung; intestine; prostate; lymph; pituitary gland; mouth; muscle; heart; larynx; parathyroid; placenta; bladder; spleen; ovary; vascular; salivary gland; connective tissue; stomach; amniotic fluid; ascites; bone; epididymis; nerve; ganglia
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: X
Map position: Xp11.22-p11.21
UniSTS entry: Chr X RH25393 [Map Viewer]
UniSTS entry: Chr X DXS423
UniSTS entry: Chr X STS-T70312 [Map Viewer]
UniSTS entry: Chr X RH26243
UniSTS entry: Chr X WI-13565 [Map Viewer]
UniSTS entry: Chr X DXS423
UniSTS entry: Chr X SMC1L1__1206
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (13)

AF176781.1 Homo sapiens MSTP142 mRNA, complete cds PA
BX640922.1 Homo sapiens mRNA; cDNA DKFZp686L19178 (from clone DKFZp686L19178) PA
NM_006306.2 Homo sapiens structural maintenance of chromosomes 1A (SMC1A), mRNA P
BC064368.1 Homo sapiens structural maintenance of chromosomes 1A, mRNA (cDNA clone IMAGE:5583513), partial cds PA
BC080185.1 Homo sapiens structural maintenance of chromosomes 1A, mRNA (cDNA clone IMAGE:6069353), partial cds PA
BC112127.1 Homo sapiens SMC1 structural maintenance of chromosomes 1-like 1 (yeast), mRNA (cDNA clone MGC:138332 IMAGE:8327595), complete cds P
D80000.2 Homo sapiens KIAA0178 mRNA, complete cds P
AK056308.1 Homo sapiens cDNA FLJ31746 fis, clone NT2RI2007334
AK055575.1 Homo sapiens cDNA FLJ31013 fis, clone HLUNG2000232
AK291921.1 Homo sapiens cDNA FLJ77162 partial cds, highly similar to Homo sapiens SMC1 structural maintenance of chromosomes 1-like 1 (SMC1L1), mRNA P
AK091458.1 Homo sapiens cDNA FLJ34139 fis, clone FCBBF3011183
BC171726.1 Homo sapiens cDNA clone IMAGE:9051918 P
AK301266.1 Homo sapiens cDNA FLJ50250 complete cds, highly similar to Structural maintenance of chromosome 1-like 1 protein P

EST sequences (10 of 549) [Show all sequences]

AA984244.1 Clone IMAGE:1629671 brain 3' read
AA985298.1 Clone IMAGE:1616211 brain 3' read
R17165.1 Clone IMAGE:31914 brain 5' read
AI002924.1 Clone IMAGE:1698750 kidney 3' read A
R18750.1 Clone IMAGE:32826 brain 5' read
AI034435.1 Clone IMAGE:1647732 parathyroid 3' read A
AI042030.1 Clone IMAGE:1660696 mixed 3' read A
AI061237.1 Clone IMAGE:1700729 kidney 3' read A
AA948341.1 Clone IMAGE:1589380 kidney 3' read
CB051530.1 Clone IMAGE:3289666 uncharacterized tissue 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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