> Collagen, type V, alpha 1 (COL5A1)
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UGID:164013     UniGene Hs.210283     Homo sapiens (human)   COL5A1 Links
Collagen, type V, alpha 1 (COL5A1)

Human protein-coding gene COL5A1. Represented by 635 ESTs from 220 cDNA libraries. EST representation biased toward embryoid body. Corresponds to reference sequence NM_000093.3. [UniGene 164013 - Hs.210283]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_000084.3 COL5A1 gene product H. sapiens 100.0 1837
NP_056549.2 Col5a1 gene product M. musculus 96.9 1837
NP_001171883.1 col11a1b gene product D. rerio 75.6 1805
NP_001081258.1 collagen alpha-1(II) chain precursor X. laevis 49.6 1398
NP_001138063.1 CG42342, isoform E D. melanogaster 47.8 339
NP_510663.1 Protein LET-2, isoform b C. elegans 45.9 1223
Other hits (2 of 42) [Show all]SpeciesId(%)Len(aa)
XP_003911169.1 PREDICTED: collagen alpha-1(V) chain-like, partial P. anubis 98.8 1532
NP_001014971.1 COL5A1 gene product S. scrofa 98.0 1839

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
Restricted Expression: embryoid body [show more like this]
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: embryonic tissue; brain; pancreas; bone; uterus; connective tissue; mixed; eye; uncharacterized tissue; heart; muscle; lung; amniotic fluid; skin; placenta; ganglia; mammary gland; pharynx; stomach; ovary; intestine; bone marrow; liver; spleen; umbilical cord; vascular; prostate; kidney; testis; lymph node; trachea; epididymis; ear; cervix; adipose tissue; blood; thyroid; nerve; mouth; ascites
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 9
Map position: 9q34.2-q34.3
UniSTS entry: Chr 9 RH45344
UniSTS entry: Chr 9 RH70759
UniSTS entry: Chr 9 RH76754
UniSTS entry: Chr 9 RH93484
UniSTS entry: Chr 9 RH75751
UniSTS entry: Chr 9 RH70027
UniSTS entry: Chr 9 COL5A1_2419
UniSTS entry: STS-M76729
UniSTS entry: Chr 1 D13S1553
UniSTS entry: G06875
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (9)

D90279.1 Homo sapiens mRNA for collagen alpha 1(V) chain, complete cds P
AK127662.1 Homo sapiens cDNA FLJ45760 fis, clone MESTC1000147, highly similar to Collagen alpha 1(V) chain precursor P
AK122763.1 Homo sapiens cDNA FLJ16299 fis, clone PLACE6017578
NM_000093.3 Homo sapiens collagen, type V, alpha 1 (COL5A1), mRNA P
AB209864.1 Homo sapiens mRNA for Pro-alpha-1 type V collagen variant protein P
BC008760.2 Homo sapiens collagen, type V, alpha 1, mRNA (cDNA clone IMAGE:3343931), complete cds PA
AK057231.1 Homo sapiens cDNA FLJ32669 fis, clone TESTI1000125 P
AB371583.1 Homo sapiens COL5A1 mRNA for collagen type V alpha 1, complete cds, clone: HP06504-ARe79B07 PA
BC032405.1 Homo sapiens collagen, type V, alpha 1, mRNA (cDNA clone IMAGE:5209850), with apparent retained intron A

EST sequences (10 of 635) [Show all sequences]

AA905435.1 Clone IMAGE:1506196 mixed 3' read A
AA991157.1 Clone IMAGE:1607801 mammary gland 3' read
AA991683.1 Clone IMAGE:1622015 embryonic tissue 3' read A
R16562.1 Clone IMAGE:129634 mixed 3' read A
R16620.1 Clone IMAGE:129634 mixed 5' read
AI014366.1 Clone IMAGE:1611192 uncharacterized tissue 3' read
AA921913.1 Clone IMAGE:1543542 mixed 3' read A
AA948576.1 Clone IMAGE:1560478 mixed 3' read A
AI037863.1 Clone IMAGE:1664675 skin 3' read A
AI042290.1 Clone IMAGE:1665729 skin 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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