> Transformation/transcription domain-associated protein (TRRAP)
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UGID:162955     UniGene Hs.203952     Homo sapiens (human)   TRRAP Links
Transformation/transcription domain-associated protein (TRRAP)

Human protein-coding gene TRRAP. Represented by 277 ESTs from 174 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 162955 - Hs.203952]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001231509.1 TRRAP gene product H. sapiens 100.0 3858
XP_001136582.1 PREDICTED: transformation/transcription domain-associated protein isoform 1 P. troglodytes 100.0 3858
XP_003639130.1 PREDICTED: transformation/transcription domain-associated protein C. lupus familiaris 99.7 3857
XP_001093586.2 PREDICTED: transformation/transcription domain-associated protein isoform 1 M. mulatta 99.7 3842
NP_001074831.1 Trrap gene product M. musculus 98.9 3846
XP_001919276.3 PREDICTED: transformation/transcription domain-associated protein D. rerio 94.6 3822
NP_001097192.2 Nipped-A, isoform E D. melanogaster 58.9 3778
Other hits (2 of 30) [Show all]SpeciesId(%)Len(aa)
NP_001179066.1 transformation/transcription domain-associated protein B. taurus 99.5 3830
XP_003124365.3 PREDICTED: transformation/transcription domain-associated protein S. scrofa 99.1 3603

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; embryonic tissue; lung; mixed; placenta; pituitary gland; muscle; adrenal gland; uterus; stomach; liver; mammary gland; uncharacterized tissue; intestine; testis; eye; lymph node; larynx; blood; thymus; pancreas; pharynx; vascular; skin; lymph; kidney; prostate; bladder; thyroid; mouth; heart; connective tissue; cervix; bone; amniotic fluid; nerve; bone marrow; spleen
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 7
Map position: 7q21.2-q22.1
UniSTS entry: Chr 7 NIB217 [Map Viewer]
UniSTS entry: Chr 7 A008I35
UniSTS entry: Chr 1 D11S2921
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (8)

AF076974.1 Homo sapiens TRRAP protein (TRRAP) mRNA, complete cds P
AF110377.1 Homo sapiens PCAF-associated factor 400 (PAF400) mRNA, complete cds PA
NM_003496.3 Homo sapiens transformation/transcription domain-associated protein (TRRAP), transcript variant 2, mRNA PA
AB209489.1 Homo sapiens mRNA for Transformation/transcription domain-associated protein variant protein P
BC141939.1 Homo sapiens cDNA clone IMAGE:40035907
BC032759.1 Homo sapiens transformation/transcription domain-associated protein, mRNA (cDNA clone IMAGE:3452385), partial cds A
AL050077.1 Homo sapiens mRNA; cDNA DKFZp566G1746 (from clone DKFZp566G1746) A
NM_001244580.1 Homo sapiens transformation/transcription domain-associated protein (TRRAP), transcript variant 1, mRNA PA

EST sequences (10 of 277) [Show all sequences]

R18144.1 Clone IMAGE:30409 brain 5' read
AI129049.1 Clone IMAGE:1663335 skin 3' read A
CB054556.1 Clone IMAGE:3291525 brain 3' read A
CB054557.1 Clone IMAGE:3291525 brain 5' read P
BX094631.1 Clone IMAGp998C1069_;_IMAGE:21537 brain A
CB145237.1 Clone L16HLK3-30-C10 liver 5' read P
AA911430.1 Clone IMAGE:1417055 lung 3' read A
AI247550.1 Clone IMAGE:1849059 mixed 3' read A
AI279590.1 Clone IMAGE:1882400 lung 3' read A
AI303002.1 Clone IMAGE:1901911 kidney 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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