> Coiled-coil domain containing 40 (CCDC40)
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UGID:162783     UniGene Hs.202542     Homo sapiens (human)   CCDC40 Order cDNA clone, Links
Coiled-coil domain containing 40 (CCDC40)

Human protein-coding gene CCDC40. Represented by 101 ESTs from 57 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 162783 - Hs.202542]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_060420.2 CCDC40 gene product H. sapiens 100.0 1141
NP_780639.1 Ccdc40 gene product M. musculus 71.1 1057
XP_697018.5 PREDICTED: coiled-coil domain-containing protein 40 D. rerio 45.0 191
Other hits (2 of 20) [Show all]SpeciesId(%)Len(aa)
XP_511721.3 PREDICTED: coiled-coil domain-containing protein 40 isoform 3 P. troglodytes 98.2 1141
XP_001109774.2 PREDICTED: coiled-coil domain-containing protein 40-like M. mulatta 95.8 1017

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: testis; uterus; uncharacterized tissue; kidney; brain; mammary gland; mouth; placenta; trachea; lung; mixed; larynx; eye; prostate; muscle; connective tissue; skin; intestine; ovary; liver; embryonic tissue; adipose tissue
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 17
Map position: 17q25.3
UniSTS entry: Chr 17 RH98689
UniSTS entry: Chr 17 RH92754
UniSTS entry: Chr 17 SHGC-58932
UniSTS entry: Chr 1 D10S16
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (8)

AK130684.1 Homo sapiens cDNA FLJ27174 fis, clone SYN01865 P
BC058288.1 Homo sapiens coiled-coil domain containing 40, mRNA (cDNA clone IMAGE:4737779), complete cds PA
AK000760.1 Homo sapiens cDNA FLJ20753 fis, clone HEP02714 P
NM_017950.3 Homo sapiens coiled-coil domain containing 40 (CCDC40), transcript variant 1, mRNA PA
AB046860.1 Homo sapiens mRNA for KIAA1640 protein, partial cds P
AK056583.1 Homo sapiens cDNA FLJ32021 fis, clone NTONG1000130, weakly similar to Gallus gallus kinectin mRNA P
BC035251.1 Homo sapiens coiled-coil domain containing 40, mRNA (cDNA clone MGC:41805 IMAGE:4838111), complete cds PA
NM_001243342.1 Homo sapiens coiled-coil domain containing 40 (CCDC40), transcript variant 2, mRNA PA

EST sequences (10 of 101) [Show all sequences]

AI002121.1 Clone IMAGE:1638047 testis 3' read A
AI191633.1 Clone IMAGE:1734071 testis 3' read
AA948009.1 Clone IMAGE:1590582 kidney 3' read
AI363725.1 Clone IMAGE:1987679 uterus 3' read A
AI370331.1 Clone IMAGE:1987531 uterus 3' read A
AI393590.1 Clone IMAGE:2111852 mixed 3' read A
AI537879.1 Clone IMAGE:2189511 uterus 3' read A
BX281198.1 Clone IMAGp998O068135_;_IMAGE:3320285 intestine
BX283359.1 Clone IMAGp958E20795 lung 5' read P
AI937132.1 Clone IMAGE:2467418 brain 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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