> Coiled-coil domain containing 47 (CCDC47)
NCBI UniGene banner graphic
PubMed Nucleotide Protein Genome Structure Popset Taxonomy
 Search
NCBI

UniGene
Homepage
FAQs
Help
Query Tips
Build Info
Library Browser
DDD
Download UniGene

Related Databases
Gene
HomoloGene
EST
SRA

NIH cDNA Projects
MGC | ZGC | XGC
Finding cDNAs
UGID:162580     UniGene Hs.202011     Homo sapiens (human)   CCDC47 Order cDNA clone, Links
Coiled-coil domain containing 47 (CCDC47)

Human protein-coding gene CCDC47. Represented by 636 ESTs from 298 cDNA libraries. Corresponds to reference sequence NM_020198.2. [UniGene 162580 - Hs.202011]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_001116311.1 PREDICTED: coiled-coil domain-containing protein 47-like isoform 2 M. mulatta 100.0 482
XP_003913327.1 PREDICTED: coiled-coil domain-containing protein 47 isoform 1 P. anubis 100.0 482
XP_001150498.1 PREDICTED: coiled-coil domain-containing protein 47 isoform 3 P. troglodytes 100.0 482
NP_064583.2 CCDC47 gene product H. sapiens 100.0 482
XP_537599.2 PREDICTED: coiled-coil domain-containing protein 47 isoform 1 C. lupus familiaris 99.8 482
XP_002719520.1 PREDICTED: CCDC (human Coiled Coil Domain Containing) homolog family member (ccdc-47)-like O. cuniculus 99.8 482
XP_003131339.3 PREDICTED: coiled-coil domain-containing protein 47 S. scrofa 99.8 458
NP_001030505.1 CCDC47 gene product B. taurus 99.6 482
XP_004013069.1 PREDICTED: coiled-coil domain-containing protein 47 O. aries 99.6 482
NP_080285.2 coiled-coil domain-containing protein 47 precursor M. musculus 99.4 482
NP_001004551.1 ccdc47 gene product D. rerio 89.6 459
NP_001087058.1 coiled-coil domain-containing protein 47 precursor X. laevis 88.8 488
NP_503068.1 Protein HSP-1 C. elegans 73.2 112
NP_608786.2 CG17593, isoform A D. melanogaster 51.3 414
Other hits (2 of 42) [Show all]SpeciesId(%)Len(aa)
NP_001013996.1 Ccdc47 gene product R. norvegicus 99.4 482
XP_001501073.1 PREDICTED: coiled-coil domain-containing protein 47 E. caballus 99.4 482

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; testis; mixed; embryonic tissue; placenta; amniotic fluid; pituitary gland; vascular; bone marrow; spleen; blood; lymph; heart; pancreas; intestine; prostate; thyroid; liver; lung; lymph node; mouth; uncharacterized tissue; connective tissue; bone; eye; mammary gland; uterus; pharynx; kidney; skin; ovary; ear; nerve; parathyroid; adrenal gland; muscle; trachea; bladder; esophagus; stomach; ascites; ganglia; umbilical cord; cervix; thymus
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 17
Map position: 17q23.3
UniSTS entry: Chr 17 RH80257
UniSTS entry: Chr 17 SHGC-11242
UniSTS entry: Chr 17 RH103266
UniSTS entry: Chr 17 D17S1437E
UniSTS entry: Chr 17 D17S1628
UniSTS entry: Chr 17 RH45286 [Map Viewer]
UniSTS entry: Chr 1 D10S16
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (11)

NM_020198.2 Homo sapiens coiled-coil domain containing 47 (CCDC47), mRNA PA
AF226054.1 Homo sapiens GK001 (GK001) mRNA, complete cds PA
AK225813.1 Homo sapiens mRNA for hypothetical protein LOC57003 variant, clone: FCC129D09 P
AK027844.1 Homo sapiens cDNA FLJ14938 fis, clone PLACE1010622, weakly similar to TROPONIN T, CARDIAC MUSCLE ISOFORMS P
AK027786.1 Homo sapiens cDNA FLJ14880 fis, clone PLACE1003369 P
BC008905.2 Homo sapiens coiled-coil domain containing 47, mRNA (cDNA clone MGC:15096 IMAGE:3688068), complete cds PA
BC013600.2 Homo sapiens coiled-coil domain containing 47, mRNA (cDNA clone IMAGE:3865335), partial cds PA
AK314328.1 Homo sapiens cDNA, FLJ95088, highly similar to Homo sapiens GK001 protein (GK001), mRNA P
AK075387.1 Homo sapiens cDNA PSEC0077 fis, clone NT2RP2003902, highly similar to GK001 protein P
BC001300.1 Homo sapiens coiled-coil domain containing 47, mRNA (cDNA clone IMAGE:3451856) A
AF113221.1 Homo sapiens MSTP041 mRNA, complete cds PA

EST sequences (10 of 636) [Show all sequences]

AI002310.1 Clone IMAGE:1601469 lung 3' read
AI032098.1 Clone IMAGE:1654273 mixed 3' read
AI051591.1 Clone IMAGE:1674142 mixed 3' read PA
AI052475.1 Clone IMAGE:1675822 mixed 3' read
AI074572.1 Clone IMAGE:1673206 mixed 3' read A
AI082391.1 Clone IMAGE:1637949 mammary gland 3' read
AI086188.1 Clone IMAGE:1654067 mixed 3' read A
AI124008.1 Clone IMAGE:1694907 uterus 3' read
AI140739.1 Clone IMAGE:1683697 parathyroid 3' read
AI143688.1 Clone IMAGE:1750679 brain 3' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
NLM | NIH | UniGene | Privacy Statement | Disclaimer | NCBI Help