> Copine IV (CPNE4)
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UGID:162014     UniGene Hs.199877     Homo sapiens (human)   CPNE4 Order cDNA clone, Links
Copine IV (CPNE4)

Human protein-coding gene CPNE4. Represented by 224 ESTs from 68 cDNA libraries. EST representation biased toward fetus. Corresponds to reference sequence NM_130808.1. [UniGene 162014 - Hs.199877]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_001148396.2 PREDICTED: copine-4 isoform 3 P. troglodytes 100.0 574
NP_570720.1 CPNE4 gene product H. sapiens 100.0 556
XP_542781.3 PREDICTED: copine-4 C. lupus familiaris 100.0 556
XP_002802988.1 PREDICTED: copine-4-like M. mulatta 100.0 437
XP_001497248.2 PREDICTED: copine-4 isoform 1 E. caballus 99.8 574
NP_001102473.1 copine-4 R. norvegicus 99.8 566
XP_003895167.1 PREDICTED: copine-4 P. anubis 99.8 562
NP_082995.1 copine-4 M. musculus 99.8 556
XP_001369422.1 PREDICTED: copine-4 M. domestica 99.8 556
XP_004003391.1 PREDICTED: copine-4 O. aries 99.8 556
XP_002722109.1 PREDICTED: copine IV O. cuniculus 99.8 556
XP_001924956.3 PREDICTED: copine-4-like S. scrofa 99.8 440
XP_003200619.1 PREDICTED: copine-4 D. rerio 92.4 552
NP_001088611.1 copine III X. laevis 62.3 522
NP_172362.3 protein BONZAI 3 A. thaliana 50.0 248
NP_503069.1 Protein NRA-1, isoform a C. elegans 47.6 296
XP_001703321.1 hypothetical protein CHLREDRAFT_143968 C. reinhardtii 47.1 244
Other hits (2 of 32) [Show all]SpeciesId(%)Len(aa)
XP_001514223.2 PREDICTED: copine-4 O. anatinus 99.3 556
XP_002198662.1 PREDICTED: copine IV T. guttata 98.9 555

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
Restricted Expression: fetus [show more like this]
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; prostate; uncharacterized tissue; trachea; connective tissue; kidney; testis; heart; lung; pancreas; eye; skin; muscle; mixed; ascites; bone marrow; bone; spleen
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 3
Map position: 3q22.1
UniSTS entry: Chr 3 D3S3108 [Map Viewer]
UniSTS entry: Chr 3 A005X07
UniSTS entry: Chr 3 D3S3331 [Map Viewer]
UniSTS entry: Chr 3 G32303
UniSTS entry: Chr 3 CPNE4_4626
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (9)

AK128117.1 Homo sapiens cDNA FLJ46238 fis, clone TESTI4017382, moderately similar to Copine VII P
BC075046.2 Homo sapiens copine IV, mRNA (cDNA clone MGC:104122 IMAGE:30915576), complete cds P
BC014396.1 Homo sapiens copine IV, mRNA (cDNA clone MGC:15604 IMAGE:3162811), complete cds PA
AK056175.1 Homo sapiens cDNA FLJ31613 fis, clone NT2RI2002958, moderately similar to Homo sapiens mRNA for copine VI protein P
AF465771.1 Homo sapiens copine-like protein isoform B mRNA, complete cds P
AF465770.1 Homo sapiens copine-like protein isoform A mRNA, complete cds P
NM_130808.1 Homo sapiens copine IV (CPNE4), mRNA PA
BC028613.1 Homo sapiens copine IV, mRNA (cDNA clone IMAGE:4814409), complete cds PA
AK295557.1 Homo sapiens cDNA FLJ56085 complete cds, highly similar to Copine-4 P

EST sequences (10 of 224) [Show all sequences]

R19464.1 Clone IMAGE:33699 brain 5' read P
R19661.1 Clone IMAGE:34869 brain 5' read P
R20411.1 Clone IMAGE:32885 brain 5' read
AI094803.1 Clone IMAGE:1687056 brain 3' read
CB054801.1 Clone IMAGE:3291645 brain 3' read A
CB054802.1 Clone IMAGE:3291645 brain 5' read P
CB055198.1 Clone IMAGE:3291749 brain 3' read PA
CB055199.1 Clone IMAGE:3291749 brain 5' read P
BX106922.1 Clone IMAGp998A225738_;_IMAGE:2315037 prostate
AI202596.1 Clone IMAGE:1943205 prostate 3' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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