> Iroquois homeobox 4 (IRX4)
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UGID:161616     UniGene Hs.196927     Homo sapiens (human)   IRX4 Order cDNA clone, Links
Iroquois homeobox 4 (IRX4)

Human protein-coding gene IRX4. Represented by 18 ESTs from 10 cDNA libraries. Corresponds to reference sequence NM_016358.2. [UniGene 161616 - Hs.196927]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_057442.1 IRX4 gene product H. sapiens 100.0 518
NP_061373.1 Irx4 gene product M. musculus 87.2 514
NP_001090204.1 iroquois-class homeodomain protein irx-4-A X. laevis 71.2 495
NP_991261.1 irx4a gene product D. rerio 68.6 439
NP_524045.2 araucan, isoform A D. melanogaster 51.5 241
Other hits (2 of 34) [Show all]SpeciesId(%)Len(aa)
XP_001097842.1 PREDICTED: iroquois-class homeodomain protein IRX-4 M. mulatta 96.5 514
XP_003899521.1 PREDICTED: iroquois-class homeodomain protein IRX-4 isoform 1 P. anubis 96.3 514

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: placenta; prostate; uncharacterized tissue; lung; eye; ovary; larynx; brain; mixed
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 5
Map position: 5p15.3
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (11)

NM_016358.2 Homo sapiens iroquois homeobox 4 (IRX4), mRNA PA
AF124733.1 Homo sapiens iroquois homeobox protein 4 (IRX4) mRNA, complete cds P
BC110912.1 Homo sapiens iroquois homeobox 4, mRNA (cDNA clone MGC:131996 IMAGE:3450161), complete cds PA
BC136505.1 Homo sapiens iroquois homeobox 4, mRNA (cDNA clone MGC:168117 IMAGE:9020494), complete cds P
U90306.1 Human iroquois-class homeodomain protein IRX-4 mRNA, partial cds P
BC144204.1 Homo sapiens cDNA clone IMAGE:9052724, with apparent retained intron P
BC136506.1 Homo sapiens iroquois homeobox 4, mRNA (cDNA clone MGC:168118 IMAGE:9020495), complete cds P
AB690781.1 Homo sapiens IRX4 mRNA for iroquois-class homeodomain protein IRX-4 variant 4, complete cds PA
AB690779.1 Homo sapiens IRX4 mRNA for iroquois-class homeodomain protein IRX-4 variant 2, complete cds PA
AB690780.1 Homo sapiens IRX4 mRNA for iroquois-class homeodomain protein IRX-4 variant 3, complete cds PA
AB690778.1 Homo sapiens IRX4 mRNA for iroquois-class homeodomain protein IRX-4 variant 1, complete cds PA

EST sequences (10 of 18) [Show all sequences]

AI246240.1 Clone IMAGE:1857944 mixed 3' read
AI566193.1 Clone IMAGE:2214075 lung 3' read A
AI652266.1 Clone IMAGE:2306985 uncharacterized tissue 3' read
AI671516.1 Clone IMAGE:2307453 uncharacterized tissue 3' read A
AI950190.1 Clone IMAGE:2473525 uncharacterized tissue 3' read
CF122313.1 Clone IMAGE:30572028 prostate 5' read
BE281254.1 Clone IMAGE:3138957 placenta 5' read P
BE407995.1 Clone IMAGE:3629446 placenta 5' read P
BE542576.1 Clone IMAGE:3450161 placenta 5' read P
BE732926.1 Clone IMAGE:3842778 placenta 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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