> Histone deacetylase 9 (HDAC9)
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UGID:161482     UniGene Hs.196054     Homo sapiens (human)   HDAC9 Order cDNA clone, Links
Histone deacetylase 9 (HDAC9)

Human protein-coding gene HDAC9. Represented by 159 ESTs from 83 cDNA libraries. Corresponds to 9 reference sequences (different isoforms). [UniGene 161482 - Hs.196054]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_001103866.2 PREDICTED: histone deacetylase 9-like isoform 1 M. mulatta 100.0 1068
NP_848512.1 HDAC9 gene product H. sapiens 100.0 1068
XP_518986.3 PREDICTED: histone deacetylase 9 isoform 11 P. troglodytes 99.9 1068
XP_862756.1 PREDICTED: histone deacetylase 9 isoform 5 C. lupus familiaris 99.7 619
NP_001258315.1 histone deacetylase 9 isoform 1 M. musculus 95.7 1087
NP_001079307.1 histone deacetylase 9 X. laevis 77.5 560
XP_685659.4 PREDICTED: histone deacetylase 5-like D. rerio 67.0 1093
NP_727682.1 HDAC4, isoform B D. melanogaster 62.3 329
NP_001257279.1 Protein HDA-4, isoform b C. elegans 53.8 381
NP_200915.2 histone deacetylase 18 A. thaliana 51.9 270
XP_956974.2 hypothetical protein NCU01525 N. crassa 50.0 264
XP_001697497.1 histone deacetylase C. reinhardtii 48.9 221
NP_014377.1 Hda1p S. cerevisiae 47.4 194
Other hits (2 of 54) [Show all]SpeciesId(%)Len(aa)
XP_003130242.2 PREDICTED: histone deacetylase 9 isoform 1 S. scrofa 98.8 584
XP_001496799.2 PREDICTED: histone deacetylase 9-like isoform 2 E. caballus 98.8 1064

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; mammary gland; adrenal gland; testis; blood; prostate; uncharacterized tissue; lymph node; uterus; lung; intestine; placenta; larynx; stomach; connective tissue; pharynx; liver; mouth; spleen; skin; thymus; kidney; amniotic fluid; trachea; heart; eye; embryonic tissue; muscle; bone marrow; mixed; pituitary gland; vascular; ganglia
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 7
Map position: 7p21.1
UniSTS entry: Chr 7 RH69484
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (29)

AB018287.1 Homo sapiens mRNA for KIAA0744 protein, partial cds P
AY197371.1 Homo sapiens histone deacetylase 9 (HDAC9) mRNA, complete cds; alternatively spliced P
AJ459808.1 Homo sapiens mRNA for histone decetylase 9b (HDAC9B gene) P
NM_178425.2 Homo sapiens histone deacetylase 9 (HDAC9), transcript variant 5, mRNA P
NM_178423.1 Homo sapiens histone deacetylase 9 (HDAC9), transcript variant 4, mRNA P
AY429540.1 Homo sapiens HDAC9v_1 mRNA sequence; alternatively spliced P
NM_014707.1 Homo sapiens histone deacetylase 9 (HDAC9), transcript variant 3, mRNA P
CR749550.1 Homo sapiens mRNA; cDNA DKFZp779K1053 (from clone DKFZp779K1053) PA
BC092441.1 Homo sapiens cDNA clone IMAGE:30411148 A
BC111735.1 Homo sapiens histone deacetylase 9, mRNA (cDNA clone IMAGE:40036015), partial cds P
AY032738.1 Homo sapiens histone deacetylase 9a (HDAC9) mRNA, complete cds, alternatively spliced P
AY032737.1 Homo sapiens histone deacetylase 9 (HDAC9) mRNA, complete cds, alternatively spliced P
BC150328.1 Homo sapiens histone deacetylase 9, mRNA (cDNA clone MGC:167816 IMAGE:8860495), complete cds PA
NM_058176.2 Homo sapiens histone deacetylase 9 (HDAC9), transcript variant 1, mRNA PA
BC152405.1 Homo sapiens histone deacetylase 9, mRNA (cDNA clone MGC:176629 IMAGE:8862508), complete cds PA
AK097178.1 Homo sapiens cDNA FLJ39859 fis, clone SPLEN2015094, moderately similar to Mus musculus histone deacetylase mHDA1 mRNA P
AK095820.1 Homo sapiens cDNA FLJ38501 fis, clone HCHON1000176, moderately similar to Histone deacetylase 5 P
AF124924.1 Homo sapiens histone deacetylase HDAC7 (HDAC7) mRNA, partial cds P
AK316109.1 Homo sapiens cDNA, FLJ79008 complete cds, highly similar to Histone deacetylase 9 PA
AK304410.1 Homo sapiens cDNA FLJ54580 complete cds, highly similar to Histone deacetylase 9 P
AK304343.1 Homo sapiens cDNA FLJ54577 complete cds, highly similar to Histone deacetylase 9 P
AK304298.1 Homo sapiens cDNA FLJ55607 complete cds, highly similar to Histone deacetylase 9 P
AK297404.1 Homo sapiens cDNA FLJ61317 complete cds, highly similar to Histone deacetylase 9 P
AK296214.1 Homo sapiens cDNA FLJ53343 complete cds, highly similar to Histone deacetylase 9 P
NM_001204148.1 Homo sapiens histone deacetylase 9 (HDAC9), transcript variant 10, mRNA PA
NM_001204147.1 Homo sapiens histone deacetylase 9 (HDAC9), transcript variant 9, mRNA PA
NM_001204146.1 Homo sapiens histone deacetylase 9 (HDAC9), transcript variant 8, mRNA PA
NM_001204145.1 Homo sapiens histone deacetylase 9 (HDAC9), transcript variant 7, mRNA PA
NM_001204144.1 Homo sapiens histone deacetylase 9 (HDAC9), transcript variant 6, mRNA PA

EST sequences (10 of 159) [Show all sequences]

T06037.1 Clone HFBDN25 brain
AI274776.1 Clone IMAGE:1986686 uterus 3' read A
AI363982.1 Clone IMAGE:1993052 uterus 3' read A
AI608745.1 Clone IMAGE:2266964 mouth 3' read A
BX282213.1 Clone IMAGp998A0413550_;_IMAGE:6175371 uterus P
AI911740.1 Clone IMAGE:2329825 mixed 3' read A
CD237210.1 pituitary gland
CD251065.1 Clone IMAGE:30385096 pituitary gland 5' read P
CD298753.1 Clone IMAGE:30403148 vascular 5' read
CD522808.1 Clone IMAGE:30411148 blood 5' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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