> Chromosome 2 open reading frame 54 (C2orf54)
NCBI UniGene banner graphic
PubMed Nucleotide Protein Genome Structure Popset Taxonomy
 Search
NCBI

UniGene
Homepage
FAQs
Help
Query Tips
Build Info
Library Browser
DDD
Download UniGene

Related Databases
Gene
HomoloGene
EST
SRA

NIH cDNA Projects
MGC | ZGC | XGC
Finding cDNAs
UGID:161090     UniGene Hs.193745     Homo sapiens (human)   C2orf54 Order cDNA clone, Links
Chromosome 2 open reading frame 54 (C2orf54)

Human protein-coding gene C2orf54. Represented by 41 ESTs from 20 cDNA libraries. EST representation biased toward esophagus; esophageal tumor. Corresponds to 2 reference sequences (different isoforms). [UniGene 161090 - Hs.193745]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001078906.1 C2orf54 gene product H. sapiens 100.0 446
XP_001156651.2 PREDICTED: uncharacterized protein C2orf54-like isoform 2 P. troglodytes 99.8 446
NP_765999.3 2310007B03Rik gene product M. musculus 78.3 446
Other hits (2 of 13) [Show all]SpeciesId(%)Len(aa)
XP_003908227.1 PREDICTED: uncharacterized protein C2orf54 homolog P. anubis 96.4 446
XP_001502917.1 PREDICTED: uncharacterized protein C2orf54-like E. caballus 85.8 435

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
Restricted Expression: esophagus [show more like this]
esophageal tumor [show more like this]
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: esophagus; mouth; kidney; mammary gland; skin; lung; intestine; thymus; trachea; stomach; ovary; mixed
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 2
Map position: 2q37.3
UniSTS entry: Chr 2 RH64976 [Map Viewer]
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (8)

AK026324.1 Homo sapiens cDNA: FLJ22671 fis, clone HSI08712 PA
NM_024861.2 Homo sapiens chromosome 2 open reading frame 54 (C2orf54), transcript variant 2, mRNA P
BC125154.1 Homo sapiens chromosome 2 open reading frame 54, mRNA (cDNA clone MGC:150431 IMAGE:40120634), complete cds P
BC125155.1 Homo sapiens chromosome 2 open reading frame 54, mRNA (cDNA clone MGC:150432 IMAGE:40120635), complete cds P
NM_001085437.1 Homo sapiens chromosome 2 open reading frame 54 (C2orf54), transcript variant 1, mRNA P
AK056601.1 Homo sapiens cDNA FLJ32039 fis, clone NTONG2000800 P
AK055735.1 Homo sapiens cDNA FLJ31173 fis, clone KIDNE2000070 P
AK096434.1 Homo sapiens cDNA FLJ39115 fis, clone NTONG2006187 P

EST sequences (10 of 41) [Show all sequences]

AI247256.1 Clone IMAGE:1863876 kidney 3' read
AI628384.1 Clone IMAGE:2284947 kidney 3' read
AI951331.1 Clone IMAGE:2548739 mammary gland 3' read
AI985375.1 Clone IMAGE:2496158 kidney 3' read A
BP262973.1 Clone HSI08712 intestine 5' read P
BF197989.1 Clone IMAGE:3652976 skin 3' read
DA034792.1 Clone BEAST2000135 mammary gland 5' read P
DA585915.1 Clone HLUNG2006341 lung 5' read P
DA586346.1 Clone HLUNG2006909 lung 5' read P
DA626445.1 Clone KIDNE2006678 kidney 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
NLM | NIH | UniGene | Privacy Statement | Disclaimer | NCBI Help