> Cut-like homeobox 1 (CUX1)
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UGID:160656     UniGene Hs.191482     Homo sapiens (human)   CUX1 Order cDNA clone, Links
Cut-like homeobox 1 (CUX1)

Human protein-coding gene CUX1. Represented by 1024 ESTs from 356 cDNA libraries. Corresponds to 7 reference sequences (different isoforms). [UniGene 160656 - Hs.191482]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001189472.1 CUX1 gene product H. sapiens 100.0 1515
XP_003949274.1 PREDICTED: cut-like homeobox 1 P. troglodytes 99.7 1514
NP_034116.3 Cux1 gene product M. musculus 88.5 1425
XP_003199414.1 PREDICTED: LOW QUALITY PROTEIN: si:ch211-251d10.5 D. rerio 70.2 1454
Other hits (2 of 26) [Show all]SpeciesId(%)Len(aa)
XP_003895877.1 PREDICTED: homeobox protein cut-like 1-like P. anubis 99.3 1522
XP_001114534.2 PREDICTED: cut-like 1 M. mulatta 99.1 1513

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; thymus; mixed; testis; uncharacterized tissue; bone marrow; placenta; cervix; intestine; uterus; connective tissue; lung; kidney; heart; spleen; mouth; eye; lymph; embryonic tissue; prostate; adipose tissue; liver; ovary; pharynx; lymph node; blood; skin; mammary gland; bone; umbilical cord; thyroid; larynx; stomach; vascular; muscle; pancreas; trachea; ascites; nerve; bladder; adrenal gland; esophagus; tonsil; epididymis
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 7
Map position: 7q22.1
UniSTS entry: Chr 7 WI-21075 [Map Viewer]
UniSTS entry: Chr 7 RH44454
UniSTS entry: D12S1228E
UniSTS entry: Chr 7 RH12633
UniSTS entry: Chr 7 WI-17166 [Map Viewer]
UniSTS entry: Chr 7 RH123864
UniSTS entry: Chr 7 D7S543E [Map Viewer]
UniSTS entry: Chr 7 WI-13779 [Map Viewer]
UniSTS entry: Chr 7 PMC133930P1
UniSTS entry: Chr 7 RH104044
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (22)

BC045562.1 Homo sapiens cDNA clone IMAGE:4815142
NM_181552.3 Homo sapiens cut-like homeobox 1 (CUX1), transcript variant 1, mRNA P
NM_181500.2 Homo sapiens cut-like homeobox 1 (CUX1), transcript variant 3, mRNA PA
AK125097.1 Homo sapiens cDNA FLJ43107 fis, clone CTONG2020108, highly similar to Protein CASP P
AK122726.1 Homo sapiens cDNA FLJ16230 fis, clone FEBRA2025249, highly similar to Protein CASP P
NM_001913.3 Homo sapiens cut-like homeobox 1 (CUX1), transcript variant 2, mRNA PA
BC066592.1 Homo sapiens cut-like homeobox 1, mRNA (cDNA clone MGC:75164 IMAGE:5740343), complete cds PA
CR627481.1 Homo sapiens mRNA; cDNA DKFZp762F2413 (from clone DKFZp762F2413) A
AK222832.1 Homo sapiens mRNA for CCAAT displacement protein isoform b variant, clone: HEP07381 P
AB075522.1 Homo sapiens neuroblastoma cDNA, clone:Nbla10317, full insert sequence P
BC007204.1 Homo sapiens, clone IMAGE:3605822, mRNA
AK056307.1 Homo sapiens cDNA FLJ31745 fis, clone NT2RI2007303
BC025422.2 Homo sapiens cut-like homeobox 1, mRNA (cDNA clone IMAGE:4864729), complete cds PA
AK303151.1 Homo sapiens cDNA FLJ57247 complete cds, highly similar to Protein CASP P
BC012323.1 Homo sapiens cDNA clone IMAGE:4550607, containing frame-shift errors PA
M74099.1 Human displacement protein (CCAAT) mRNA P
NM_001202546.1 Homo sapiens cut-like homeobox 1 (CUX1), transcript variant 7, mRNA PA
NM_001202544.1 Homo sapiens cut-like homeobox 1 (CUX1), transcript variant 5, mRNA PA
NM_001202543.1 Homo sapiens cut-like homeobox 1 (CUX1), transcript variant 4, mRNA P
NM_001202545.1 Homo sapiens cut-like homeobox 1 (CUX1), transcript variant 6, mRNA PA
BC040199.1 Homo sapiens cDNA clone IMAGE:4816860
L12579.1 Human alternatively spliced CUTL1 mRNA, complete cds P

EST sequences (10 of 1024) [Show all sequences]

AA962213.1 Clone IMAGE:1553517 kidney 3' read
R14668.1 Clone IMAGE:29948 brain 5' read P
AA984291.1 Clone IMAGE:1629738 brain 3' read
AA995862.1 Clone IMAGE:1611963 uncharacterized tissue 3' read
R17759.1 Clone IMAGE:25304 brain 3' read A
AA947233.1 Clone IMAGE:1560336 intestine 3' read A
AI073844.1 Clone IMAGE:1565853 mixed 3' read A
AI078456.1 Clone IMAGE:1674495 mixed 3' read
R21144.1 Clone IMAGE:36422 brain 5' read
AI082696.1 Clone IMAGE:1660632 mixed 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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