> Sorting nexin 9 (SNX9)
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UGID:160590     UniGene Hs.191213     Homo sapiens (human)   SNX9 Order cDNA clone, Links
Sorting nexin 9 (SNX9)

Human protein-coding gene SNX9. Represented by 457 ESTs from 223 cDNA libraries. Corresponds to reference sequence NM_016224.3. [UniGene 160590 - Hs.191213]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_001144722.1 PREDICTED: uncharacterized protein LOC472172 isoform 5 P. troglodytes 100.0 594
NP_057308.1 SNX9 gene product H. sapiens 100.0 594
XP_001094343.2 PREDICTED: sorting nexin-9 M. mulatta 99.7 587
XP_003898043.1 PREDICTED: sorting nexin-9 P. anubis 99.5 594
NP_079940.2 sorting nexin-9 M. musculus 95.3 594
NP_001086616.1 sorting nexin 9 X. laevis 85.6 581
NP_001025295.1 snx9b gene product D. rerio 75.7 580
NP_648348.1 SH3PX1 D. melanogaster 50.0 178
NP_872090.1 Protein LST-4, isoform d C. elegans 45.6 171
Other hits (2 of 29) [Show all]SpeciesId(%)Len(aa)
XP_003353219.1 PREDICTED: sorting nexin-9 S. scrofa 97.5 593
NP_001185955.2 sorting nexin-9 B. taurus 97.0 592

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: mixed; brain; placenta; skin; uterus; lung; kidney; testis; connective tissue; mammary gland; intestine; uncharacterized tissue; lymph node; stomach; liver; pancreas; embryonic tissue; eye; adipose tissue; vascular; blood; bone; prostate; cervix; trachea; heart; pharynx; ovary; muscle; bone marrow; parathyroid; nerve; adrenal gland; ganglia
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 6
Map position: 6q25.1-q26
UniSTS entry: Chr 6 RH26809
UniSTS entry: Chr 6 WI-19319 [Map Viewer]
UniSTS entry: Chr 6 STS-R69163
UniSTS entry: Chr 6 STS-AA010032 [Map Viewer]
UniSTS entry: Chr 6 RH92174
UniSTS entry: Chr 1 D12S1332 [Map Viewer]
UniSTS entry: Chr 1 D11S2921
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (14)

AF190158.1 Homo sapiens MSTP155 (MST155) mRNA, complete cds A
AK127345.1 Homo sapiens cDNA FLJ45417 fis, clone BRHIP3033811, highly similar to Sorting nexin-9 P
NM_016224.3 Homo sapiens sorting nexin 9 (SNX9), mRNA P
AF121859.1 Homo sapiens sorting nexin 9 (SNX9) mRNA, complete cds P
AF076957.1 Homo sapiens SDP1 protein mRNA, complete cds P
AF131214.1 Homo sapiens SH3 and PX domain-containing protein SH3PX1 (SH3PX1) mRNA, complete cds PA
AB209736.1 Homo sapiens mRNA for sorting nexin 9 variant protein P
AK026637.1 Homo sapiens cDNA: FLJ22984 fis, clone KAT11574, highly similar to AF121859 Homo sapiens sorting nexin 9 (SNX9) mRNA PA
BC001084.2 Homo sapiens sorting nexin 9, mRNA (cDNA clone IMAGE:2958415), partial cds PA
BC005022.1 Homo sapiens sorting nexin 9, mRNA (cDNA clone MGC:12550 IMAGE:3832234), complete cds PA
AJ420512.1 Homo sapiens mRNA full length insert cDNA clone EUROIMAGE 2134770 A
AF172847.1 Homo sapiens sorting nexin 9 (SNX9) mRNA, complete cds P
AK314360.1 Homo sapiens cDNA, FLJ95128, highly similar to Homo sapiens sorting nexin 9 (SNX9), mRNA P
AJ420452.1 Homo sapiens mRNA full length insert cDNA clone EUROIMAGE 965805 A

EST sequences (10 of 457) [Show all sequences]

AA864571.1 Clone IMAGE:1459404 kidney 3' read
AA972901.1 Clone IMAGE:1578948 mixed 3' read P
AI018272.1 Clone IMAGE:1626798 mixed 3' read P
R18603.1 Clone IMAGE:30396 brain 5' read
AI025222.1 Clone IMAGE:1639827 testis 3' read
AI038583.1 Clone IMAGE:1658219 embryonic tissue 3' read A
R20171.1 Clone IMAGE:34430 brain 5' read
R20941.1 Clone IMAGE:31254 brain 5' read
AI089012.1 Clone IMAGE:1634950 mixed 3' read
AI089544.1 Clone IMAGE:1695496 uterus 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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