> Intraflagellar transport 88 homolog (Chlamydomonas) (IFT88)
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UGID:159888     UniGene Hs.187376     Homo sapiens (human)   IFT88 Order cDNA clone, Links
Intraflagellar transport 88 homolog (Chlamydomonas) (IFT88)

Human protein-coding gene IFT88. Represented by 239 ESTs from 100 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 159888 - Hs.187376]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_001147729.2 PREDICTED: intraflagellar transport protein 88 homolog isoform 4 P. troglodytes 100.0 832
NP_783195.2 IFT88 gene product H. sapiens 100.0 832
NP_033402.2 Ift88 gene product M. musculus 90.5 824
NP_001001725.1 ift88 gene product D. rerio 78.9 823
NP_508511.1 Protein OSM-5 C. elegans 52.3 792
NP_523613.4 no mechanoreceptor potential B, isoform C D. melanogaster 51.6 225
XP_001700100.1 intraflagellar transport particle protein 88 C. reinhardtii 48.4 636
Other hits (2 of 45) [Show all]SpeciesId(%)Len(aa)
XP_001086373.1 PREDICTED: intraflagellar transport protein 88 homolog isoform 2 M. mulatta 99.3 823
XP_003913693.1 PREDICTED: intraflagellar transport protein 88 homolog isoform 1 P. anubis 99.3 823

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: testis; brain; uncharacterized tissue; prostate; kidney; pancreas; mammary gland; pharynx; intestine; bone marrow; placenta; skin; mouth; trachea; uterus; connective tissue; mixed; lung; eye; embryonic tissue; muscle; blood; heart; liver; cervix; lymph node; pituitary gland; ovary; larynx
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 13
Map position: 13q12.1
UniSTS entry: Chr 13 STS-U20362 [Map Viewer]
UniSTS entry: Chr 13 RH65721 [Map Viewer]
UniSTS entry: Chr 1 D15S1477
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (12)

NM_175605.3 Homo sapiens intraflagellar transport 88 homolog (Chlamydomonas) (IFT88), transcript variant 1, mRNA PA
BX640833.1 Homo sapiens mRNA; cDNA DKFZp686B12213 (from clone DKFZp686B12213) PA
AK126668.1 Homo sapiens cDNA FLJ44712 fis, clone BRACE3019941, highly similar to Intraflagellar transport 88 homolog P
BC059357.1 Homo sapiens cDNA clone IMAGE:5294882, containing frame-shift errors PA
NM_006531.3 Homo sapiens intraflagellar transport 88 homolog (Chlamydomonas) (IFT88), transcript variant 2, mRNA PA
U20362.1 Human Tg737 mRNA, complete cds P
AK058172.1 Homo sapiens cDNA FLJ25443 fis, clone TST08530 P
AK308281.1 Homo sapiens cDNA, FLJ98229 P
AK310223.1 Homo sapiens cDNA, FLJ17265 P
BC030776.1 Homo sapiens intraflagellar transport 88 homolog (Chlamydomonas), mRNA (cDNA clone MGC:26259 IMAGE:4824965), complete cds PA
AK300769.1 Homo sapiens cDNA FLJ55369 complete cds, highly similar to Intraflagellar transport 88 homolog PA
AK303853.1 Homo sapiens cDNA FLJ61037 complete cds, highly similar to Intraflagellar transport 88 homolog P

EST sequences (10 of 239) [Show all sequences]

R14397.1 Clone IMAGE:29045 brain 5' read P
AI015542.1 Clone IMAGE:1636080 kidney 3' read A
AI041306.1 Clone IMAGE:1643021 testis 3' read P
AI076256.1 Clone IMAGE:1672783 mixed 3' read PA
BX117657.1 Clone IMAGp998N034503_;_IMAGE:1841090 mixed
AI190456.1 Clone IMAGE:1731722 heart 3' read PA
AI250878.1 Clone IMAGE:1858648 mixed 3' read A
AI341340.1 Clone IMAGE:2009829 uncharacterized tissue 3' read A
AI369405.1 Clone IMAGE:2019499 brain 3' read PA
AI436331.1 Clone IMAGE:2126253 mixed 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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