Ribosomal protein L4 (RPL4)

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UGID:159752 UniGene Hs.186350 Homo sapiens (human) RPL4

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Ribosomal protein L4 (RPL4)

Human protein-coding gene RPL4. Represented by 2833 ESTs from 643 cDNA libraries. [UniGene 159752 - Hs.186350]

SELECTED PROTEIN SIMILARITIES

Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.

Best Hits and Hits from model organisms		Species	Id(%)	Len(aa)
XP_001110778.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	PREDICTED: 60S ribosomal protein L4-like isoform 4	M. mulatta	100.0	426
XP_003901138.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	PREDICTED: 60S ribosomal protein L4	P. anubis	100.0	426
NP_000959.2 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	RPL4 gene product	H. sapiens	100.0	426
NP_077174.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	Rpl4 gene product	M. musculus	98.6	418
NP_001082721.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	60S ribosomal protein L4-B	X. laevis	93.3	400
NP_998272.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	rpl4 gene product	D. rerio	90.1	374
NP_524538.2 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	ribosomal protein L4	D. melanogaster	76.1	400
XP_001694804.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	ribosomal protein L4, component of cytosolic 80S ribosome and 60S large subunit	C. reinhardtii	70.9	378
NP_010295.3 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	ribosomal 60S subunit protein L4B	S. cerevisiae	70.1	360
NP_187574.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	60S ribosomal protein L4-1	A. thaliana	70.0	380
NP_491416.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	Protein RPL-4	C. elegans	68.8	337
XP_961104.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	60S ribosomal protein L4	N. crassa	68.0	337
Other hits (2 of 64) [Show all]		Species	Id(%)	Len(aa)
NP_001239338.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	60S ribosomal protein L4	C. lupus familiaris	99.0	421
XP_001497144.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	PREDICTED: 60S ribosomal protein L4-like	E. caballus	99.0	421

GENE EXPRESSION

Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.

	EST Profile:	Approximate expression patterns inferred from EST sources. [Show more entries with profiles like this]
	GEO Profiles:	Experimental gene expression data (Gene Expression Omnibus).
	cDNA Sources:	brain; intestine; lung; uncharacterized tissue; uterus; pancreas; testis; prostate; cervix; eye; bone; embryonic tissue; placenta; kidney; blood; skin; liver; stomach; muscle; mammary gland; ovary; mixed; lymph; connective tissue; lymph node; bone marrow; heart; ascites; umbilical cord; thyroid; bladder; pharynx; parathyroid; mouth; salivary gland; thymus; tonsil; spleen; adrenal gland; ear; nerve; vascular; pituitary gland; larynx; esophagus; trachea; amniotic fluid; adipose tissue; epididymis; ganglia; pineal gland

MAPPING POSITION

Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.

Chromosome:	15
Map position:	15q22
UniSTS entry:	Chr 15	RH65816	[Map Viewer]
UniSTS entry:	Chr 15	RH68287
UniSTS entry:	Chr 15	SHGC-18
UniSTS entry:	Chr 15	RH65253
UniSTS entry:	Chr 15	GDB:451670
UniSTS entry:	Chr 15	D14S106E
UniSTS entry:	Chr 1	D11S3114
UniSTS entry:	Chr 6	SHGC-12704	[Map Viewer]

SEQUENCES

Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (4)

AK125772.1	Homo sapiens cDNA FLJ43784 fis, clone TESTI2051867, highly similar to 60S ribosomal protein L4	P
AK294113.1	Homo sapiens cDNA FLJ56689 complete cds, highly similar to 60S ribosomal protein L4	P
AK297484.1	Homo sapiens cDNA FLJ50994 complete cds, moderately similar to 60S ribosomal protein L4	PA
BC030000.1	Homo sapiens ribosomal protein L4, mRNA (cDNA clone IMAGE:5110884)	A

EST sequences (10 of 2833) [Show all sequences]

AA865528.1	Clone IMAGE:1459301	kidney	3' read	A
AA962035.1	Clone IMAGE:1593863	kidney	3' read	A
AA962091.1	Clone IMAGE:1599602	uncharacterized tissue	3' read	PA
AA975626.1	Clone IMAGE:1590991	kidney	3' read	PA
AA975761.1	Clone IMAGE:1591145	kidney	3' read	PA
AA976380.1	Clone IMAGE:1591498	kidney	3' read	PA
AA983361.1	Clone IMAGE:1592734	kidney	3' read	A
AA987711.1	Clone IMAGE:1593413	kidney	3' read	P
AA988682.1	Clone IMAGE:1593466	kidney	3' read	PA
AA988422.1	Clone IMAGE:1594127	kidney	3' read	PA

Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria