> Alstrom syndrome 1 (ALMS1)
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UGID:159609     UniGene Hs.184720     Homo sapiens (human)   ALMS1 Links
Alstrom syndrome 1 (ALMS1)

Human protein-coding gene ALMS1. Represented by 213 ESTs from 110 cDNA libraries. Corresponds to reference sequence NM_015120.4. [UniGene 159609 - Hs.184720]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_055935.4 ALMS1 gene product H. sapiens 100.0 4168
NP_660258.2 Alstrom syndrome protein 1 homolog M. musculus 64.6 3178
XP_690375.5 PREDICTED: Alstrom syndrome protein 1 D. rerio 46.8 173
Other hits (2 of 14) [Show all]SpeciesId(%)Len(aa)
XP_003949875.1 PREDICTED: LOW QUALITY PROTEIN: Alstrom syndrome protein 1 P. troglodytes 95.8 4053
XP_001105121.1 PREDICTED: Alstrom syndrome protein 1 isoform 2 M. mulatta 95.1 4170

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: testis; brain; uncharacterized tissue; mixed; ovary; stomach; vascular; heart; mammary gland; thymus; eye; embryonic tissue; uterus; pituitary gland; mouth; bladder; lung; kidney; connective tissue; pancreas; muscle; liver; thyroid; larynx; intestine; trachea; ascites; ganglia; bone; skin; adipose tissue; placenta; lymph node
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 2
Map position: 2p13
UniSTS entry: Chr 2 RH12381
UniSTS entry: Chr 2 D2S2696
UniSTS entry: Chr 2 RH45615
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (9)

BC050330.1 Homo sapiens Alstrom syndrome 1, mRNA (cDNA clone IMAGE:4827788), partial cds PA
BX648632.1 Homo sapiens mRNA; cDNA DKFZp686D1828 (from clone DKFZp686D1828) PA
BX647706.1 Homo sapiens mRNA; cDNA DKFZp686A118 (from clone DKFZp686A118) PA
EF151141.1 Homo sapiens Alstrom syndrome 1 splice variant (ALMS1) mRNA, partial cds, alternatively spliced
AJ417593.2 Homo sapiens mRNA for ALMS1 protein P
NM_015120.4 Homo sapiens Alstrom syndrome 1 (ALMS1), mRNA P
AL833495.1 Homo sapiens mRNA; cDNA DKFZp686L0929 (from clone DKFZp686L0929) PA
BC035025.2 Homo sapiens Alstrom syndrome 1, mRNA (cDNA clone IMAGE:4827788), partial cds PA
AB002326.3 Homo sapiens mRNA for KIAA0328 protein, partial cds P

EST sequences (10 of 213) [Show all sequences]

AA961070.1 Clone IMAGE:1578817 mixed 3' read P
R14339.1 Clone IMAGE:28541 brain 5' read
R14519.1 Clone IMAGE:29305 brain 5' read P
R21286.1 Clone IMAGE:35677 brain 5' read P
CB046774.1 Clone IMAGE:3253039 kidney 3' read
CB046775.1 Clone IMAGE:3253039 kidney 5' read P
BX088771.1 Clone IMAGp998D103214_;_IMAGE:1276377 testis P
AI221436.1 Clone IMAGE:1840994 mixed 3' read
AI223186.1 Clone IMAGE:1840549 mixed 3' read A
CB144662.1 Clone L11SNU354s1-28-D01 liver 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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