> Charged multivesicular body protein 4C (CHMP4C)
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UGID:159497     UniGene Hs.183861     Homo sapiens (human)   CHMP4C Order cDNA clone, Links
Charged multivesicular body protein 4C (CHMP4C)

Human protein-coding gene CHMP4C. Represented by 79 ESTs from 51 cDNA libraries. Corresponds to reference sequence NM_152284.3. [UniGene 159497 - Hs.183861]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_528179.3 PREDICTED: charged multivesicular body protein 4c P. troglodytes 100.0 232
NP_689497.1 CHMP4C gene product H. sapiens 100.0 232
XP_001093735.1 PREDICTED: charged multivesicular body protein 4c-like M. mulatta 99.6 232
XP_003902964.1 PREDICTED: charged multivesicular body protein 4c P. anubis 99.6 232
NP_079795.1 Chmp4c gene product M. musculus 90.5 231
NP_001085880.1 charged multivesicular body protein 4c X. laevis 79.7 226
NP_998622.1 chmp4b gene product D. rerio 75.8 223
NP_610462.3 shrub D. melanogaster 57.3 225
NP_495337.1 Protein VPS-32.1 C. elegans 56.6 219
Other hits (2 of 35) [Show all]SpeciesId(%)Len(aa)
NP_001177119.1 CHMP4C gene product S. scrofa 95.8 236
XP_002710707.1 PREDICTED: charged multivesicular body protein 4C-like O. cuniculus 94.4 232

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: pancreas; mammary gland; intestine; prostate; uterus; muscle; uncharacterized tissue; stomach; mixed; kidney; blood; placenta; bone marrow; salivary gland; skin; eye; embryonic tissue; lymph node; umbilical cord; larynx; bone; lung; parathyroid
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 8
Map position: 8q21.13
UniSTS entry: Chr 8 RH99324
UniSTS entry: Chr 1 D11S2560
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (6)

AB120734.1 Homo sapiens Shax3 mRNA for Snf7 homologue associated with Alix 3, complete cds P
AY329086.1 Homo sapiens SNF7-3 mRNA, complete cds P
AK000049.1 Homo sapiens cDNA FLJ20042 fis, clone COL00424 PA
BC014321.1 Homo sapiens chromatin modifying protein 4C, mRNA (cDNA clone MGC:22825 IMAGE:3828410), complete cds PA
AK314873.1 Homo sapiens cDNA, FLJ95774, Homo sapiens Snf7 homologue associated with Alix 3 (Shax3), mRNA P
NM_152284.3 Homo sapiens charged multivesicular body protein 4C (CHMP4C), mRNA P

EST sequences (10 of 79) [Show all sequences]

BX114847.1 Clone IMAGp998C104889_;_IMAGE:1989057 uterus A
AI202463.1 Clone IMAGE:1943157 prostate 3' read A
AI362420.1 Clone IMAGE:1989057 uterus 3' read
AI566054.1 Clone IMAGE:2172064 kidney 3' read A
AI635040.1 Clone IMAGE:2287528 uterus 3' read
AI680186.1 Clone IMAGE:2264615 uterus 3' read
AI688605.1 Clone IMAGE:2325933 intestine 3' read A
AI693995.1 Clone IMAGE:2328034 intestine 3' read A
AI826422.1 Clone IMAGE:2417270 prostate 3' read A
AI826797.1 Clone IMAGE:2419401 prostate 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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