> Troponin C type 2 (fast) (TNNC2)
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UGID:159335     UniGene Hs.182421     Homo sapiens (human)   TNNC2 Order cDNA clone, Links
Troponin C type 2 (fast) (TNNC2)

Human protein-coding gene TNNC2. Represented by 569 ESTs from 74 cDNA libraries. EST representation biased toward adult. Corresponds to reference sequence NM_003279.2. [UniGene 159335 - Hs.182421]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001032428.1 Tnnc2 gene product R. norvegicus 100.0 159
XP_001108623.1 PREDICTED: troponin C, skeletal muscle M. mulatta 100.0 159
XP_003904727.1 PREDICTED: troponin C, skeletal muscle P. anubis 100.0 159
XP_001157246.1 PREDICTED: troponin C, skeletal muscle P. troglodytes 100.0 159
NP_003270.1 TNNC2 gene product H. sapiens 100.0 159
XP_543023.2 PREDICTED: troponin C, skeletal muscle C. lupus familiaris 100.0 159
NP_001076114.1 TNNC2 gene product O. cuniculus 100.0 159
NP_033420.1 Tnnc2 gene product M. musculus 99.4 159
NP_001079398.1 fast skeletal troponin C beta X. laevis 94.4 161
NP_571638.1 tnnc2 gene product D. rerio 84.4 159
NP_523710.1 calmodulin, isoform A D. melanogaster 53.0 148
NP_503386.1 Protein CMD-1 C. elegans 52.7 146
NP_176814.1 calmodulin 4 A. thaliana 52.4 148
XP_961276.2 calmodulin N. crassa 51.4 142
XP_001703420.1 calmodulin C. reinhardtii 50.0 152
Other hits (2 of 57) [Show all]SpeciesId(%)Len(aa)
XP_001917628.2 PREDICTED: troponin C, skeletal muscle-like E. caballus 99.4 163
NP_001001862.1 TNNC2 gene product S. scrofa 99.4 159

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
Restricted Expression: adult [show more like this]
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: muscle; heart; lung; pancreas; eye; placenta; mixed; vascular; brain; intestine; embryonic tissue; mouth; mammary gland; thyroid; testis; blood; stomach; adrenal gland; pituitary gland; liver; prostate; nerve; larynx; kidney; uterus; uncharacterized tissue; thymus; skin; bone
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 20
Map position: 20q12-q13.11
UniSTS entry: Chr 20 RH41789
UniSTS entry: Chr 16 RH125423
UniSTS entry: Chr 16 RH124597
UniSTS entry: PMC153210P1
UniSTS entry: PMC140912P1
UniSTS entry: PMC123151P1
UniSTS entry: Rn18s
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (8)

NM_003279.2 Homo sapiens troponin C type 2 (fast) (TNNC2), mRNA PA
CR541884.1 Homo sapiens full open reading frame cDNA clone RZPDo834D0533D for gene TNNC2, troponin C2, fast; complete cds, without stopcodon P
CR541864.1 Homo sapiens full open reading frame cDNA clone RZPDo834H0832D for gene TNNC2, troponin C2, fast; complete cds, incl. stopcodon P
BC005323.1 Homo sapiens troponin C type 2 (fast), mRNA (cDNA clone MGC:12407 IMAGE:3934188), complete cds PA
M22307.1 Human (clone PWTNC4) skeletal muscle troponin C mRNA, complete cds P
AK291323.1 Homo sapiens cDNA FLJ76408 complete cds, highly similar to Homo sapiens troponin C type 2 (fast) (TNNC2), mRNA P
AK300665.1 Homo sapiens cDNA FLJ55420 complete cds, highly similar to Troponin C, skeletal muscle P
X07898.1 Human mRNA for fast skeletal troponin C P

EST sequences (10 of 569) [Show all sequences]

AA866068.1 Clone IMAGE:1459460 kidney 3' read A
AI080746.1 Clone IMAGE:1660182 embryonic tissue 3' read PA
BX104480.1 Clone IMAGp998N22822_;_IMAGE:358101 heart P
AI183778.1 Clone IMAGE:1739299 lung 3' read P
AI185222.1 Clone IMAGE:1742111 lung 3' read PA
AI193179.1 Clone IMAGE:1741550 lung 3' read A
AI277916.1 Clone IMAGE:1893249 placenta 3' read PA
AI291352.1 Clone IMAGE:1894892 placenta 3' read PA
AI292040.1 Clone IMAGE:1894792 placenta 3' read PA
AI312900.1 Clone IMAGE:1929710 lung 3' read PA


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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