> Collagen, type IV, alpha 1 (COL4A1)
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UGID:133699     UniGene Hs.17441     Homo sapiens (human)   COL4A1 Order cDNA clone, Links
Collagen, type IV, alpha 1 (COL4A1)

Human protein-coding gene COL4A1. Represented by 946 ESTs from 260 cDNA libraries. Corresponds to reference sequence NM_001845.4. [UniGene 133699 - Hs.17441]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001836.2 COL4A1 gene product H. sapiens 100.0 1668
NP_034061.2 Col4a1 gene product M. musculus 93.3 1668
XP_694040.5 PREDICTED: collagen alpha-1(IV) chain D. rerio 68.9 1638
NP_510664.1 Protein LET-2, isoform a C. elegans 54.5 1751
NP_723044.1 collagen type IV, isoform A D. melanogaster 49.3 1692
NP_001083544.1 collagen, type III, alpha 1 (Ehlers-Danlos syndrome type IV, autosomal dominant) precursor X. laevis 48.1 1099
Other hits (2 of 42) [Show all]SpeciesId(%)Len(aa)
XP_003914121.1 PREDICTED: collagen alpha-1(IV) chain-like, partial P. anubis 99.2 1306
XP_001088660.2 PREDICTED: collagen alpha-1(IV) chain M. mulatta 98.8 1606

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: embryonic tissue; placenta; uterus; mixed; lung; uncharacterized tissue; pancreas; heart; brain; kidney; intestine; bone; stomach; eye; umbilical cord; skin; connective tissue; vascular; adipose tissue; liver; bone marrow; prostate; mammary gland; mouth; ear; nerve; spleen; ovary; muscle; adrenal gland; ganglia; testis; esophagus; amniotic fluid; thyroid; epididymis; larynx
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 13
Map position: 13q34
UniSTS entry: Chr 13 D13S1449 [Map Viewer]
UniSTS entry: Chr 13 D12S2121
UniSTS entry: Chr 13 A005V07 [Map Viewer]
UniSTS entry: Chr 13 G32294
UniSTS entry: Chr 13 D13S1440
UniSTS entry: Chr 13 COL4A1__1176
UniSTS entry: D13S840E
UniSTS entry: Chr 13 WI-16856 [Map Viewer]
UniSTS entry: Col4a1
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (18)

BC047305.1 Homo sapiens collagen, type IV, alpha 1, mRNA (cDNA clone IMAGE:4941939), partial cds PA
AY285780.1 Homo sapiens arresten mRNA, partial cds P
M11315.1 Human alpha-1 type IV procollagen mRNA P
NM_001845.4 Homo sapiens collagen, type IV, alpha 1 (COL4A1), mRNA PA
AF258349.1 Homo sapiens arresten mRNA, partial cds P
AB209646.1 Homo sapiens mRNA for COL4A1 protein variant protein P
DQ464183.1 Homo sapiens arresten mRNA, partial cds P
AF363672.1 Homo sapiens arresten mRNA, partial cds P
AF400431.1 Homo sapiens arresten mRNA, partial cds P
BC142626.1 Homo sapiens collagen, type IV, alpha 1, mRNA (cDNA clone IMAGE:40147488), complete cds PA
BC151220.1 Homo sapiens collagen, type IV, alpha 1, mRNA (cDNA clone MGC:165004 IMAGE:40148649), complete cds PA
EU260121.1 Homo sapiens type IV collagen alpha 1 mRNA, partial cds P
M10941.1 Human procollagen type IV alpha-1 chain.
M10940.1 pro-alpha-1(IV), mRNA sequence P
AF536207.1 Homo sapiens arresten mRNA, partial cds P
Y00706.1 Human mRNA for alpha1 chain of basement membrane (type IV) collagen P
X05561.1 Human mRNA for alpha-1 chain of collagen IV N-terminus P
X03963.1 Human procollagen alpha-1 (IV) mRNA 3'untranslated region (UTR)

EST sequences (10 of 946) [Show all sequences]

AA983249.1 Clone IMAGE:1591935 kidney 3' read A
AA988356.1 Clone IMAGE:1605566 kidney 3' read
AA995440.1 Clone IMAGE:1612059 uncharacterized tissue 3' read A
AA834252.1 Clone IMAGE:1421321 kidney
AA887305.1 Clone IMAGE:1501591 kidney 3' read A
AI015874.1 Clone IMAGE:1622267 embryonic tissue 3' read A
AI022392.1 Clone IMAGE:1652391 mixed 3' read
AI033360.1 Clone IMAGE:1655183 mixed 3' read A
AI049619.1 Clone IMAGE:1700938 kidney 3' read PA
AI051606.1 Clone IMAGE:1674152 mixed 3' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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