> Neurocan (NCAN)
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UGID:157333     UniGene Hs.169047     Homo sapiens (human)   NCAN Links
Neurocan (NCAN)

Human protein-coding gene NCAN. Represented by 140 ESTs from 60 cDNA libraries. EST representation biased toward glioma. Corresponds to reference sequence NM_004386.2. [UniGene 157333 - Hs.169047]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001029342.1 NCAN gene product P. troglodytes 99.5 1320
NP_031815.2 Ncan gene product M. musculus 81.5 1267
XP_003201085.1 PREDICTED: neurocan core protein D. rerio 75.3 259
NP_001119808.1 VCAN gene product H. sapiens 57.3 629
NP_001082106.1 brevican precursor X. laevis 54.7 1014
Other hits (2 of 19) [Show all]SpeciesId(%)Len(aa)
XP_003915287.1 PREDICTED: neurocan core protein P. anubis 96.9 1352
XP_002808228.1 PREDICTED: LOW QUALITY PROTEIN: neurocan core protein-like M. mulatta 96.6 1216

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
Restricted Expression: glioma [show more like this]
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; uncharacterized tissue; embryonic tissue; ovary; testis; mouth; placenta; thyroid; vascular; muscle; mammary gland; mixed
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 19
Map position: 19p12
UniSTS entry: Chr 19 RH35856
UniSTS entry: Chr 19 SHGC-105663
UniSTS entry: Chr 19 D19S652E
UniSTS entry: Chr 19 WI-22053 [Map Viewer]
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (6)

AK126639.1 Homo sapiens cDNA FLJ44681 fis, clone BRACE3010086, moderately similar to Homo sapiens chondroitin sulfate proteoglycan 3 (neurocan) (CSPG3) P
NM_004386.2 Homo sapiens neurocan (NCAN), mRNA P
AB210004.1 Homo sapiens mRNA for CSPG3 variant protein, partial cds, clone: fg02848 P
AK309138.1 Homo sapiens cDNA, FLJ99179 P
AK297395.1 Homo sapiens cDNA FLJ60302 complete cds, highly similar to Neurocan core protein precursor P
AF026547.1 Homo sapiens neurocan (CSPG3) mRNA, complete cds PA

EST sequences (10 of 140) [Show all sequences]

AI000557.1 Clone IMAGE:1609966 mammary gland 3' read A
T26375.1 Clone LLAB11C10 brain 3' read A
T06406.1 Clone HFBDT04 brain
BX107820.1 Clone IMAGp998D144449_;_IMAGE:1750621 brain P
R25707.1 Clone IMAGE:36464 brain 5' read
CB117942.1 Clone B1T694954-7-D07 brain 5' read P
CB152010.1 Clone B1T694954-17-B11 brain 5' read
AI085671.1 Clone IMAGE:1750621 brain 3' read P
T07817.1 Clone HFBEO56 brain
AI421484.1 Clone IMAGE:2096782 brain 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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