> Autophagy related 2B (ATG2B)
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UGID:157293     UniGene Hs.168241     Homo sapiens (human)   ATG2B Links
Autophagy related 2B (ATG2B)

Human protein-coding gene ATG2B. Represented by 232 ESTs from 124 cDNA libraries. Corresponds to reference sequence NM_018036.5. [UniGene 157293 - Hs.168241]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_060506.5 ATG2B gene product H. sapiens 100.0 2077
XP_510152.3 PREDICTED: autophagy-related protein 2 homolog B P. troglodytes 99.7 2077
NP_083930.5 Atg2b gene product M. musculus 92.9 2074
XP_001340508.1 PREDICTED: autophagy-related protein 2 homolog B-like, partial D. rerio 80.3 309
NP_647748.1 Autophagy-specific gene 2, isoform A D. melanogaster 53.0 247
Other hits (2 of 33) [Show all]SpeciesId(%)Len(aa)
XP_001101467.2 PREDICTED: autophagy-related protein 2 homolog B-like M. mulatta 99.1 2077
XP_003902294.1 PREDICTED: autophagy-related protein 2 homolog B P. anubis 98.9 2077

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; mixed; embryonic tissue; testis; lymph node; uncharacterized tissue; kidney; skin; eye; intestine; liver; pancreas; lung; uterus; muscle; prostate; larynx; mouth; connective tissue; adrenal gland; ovary; esophagus; thymus; mammary gland; stomach; blood; adipose tissue; placenta; bone; bone marrow; pituitary gland; thyroid
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 14
Map position: 14q32.2
UniSTS entry: Chr 14 RH70020
UniSTS entry: Chr 14 A006S30 [Map Viewer]
UniSTS entry: Chr 14 RH47969 [Map Viewer]
UniSTS entry: Chr 14 WI-14378 [Map Viewer]
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (9)

AK128275.1 Homo sapiens cDNA FLJ46412 fis, clone THYMU3011534 P
AK123451.1 Homo sapiens cDNA FLJ41457 fis, clone BRSTN2013502
AK001104.1 Homo sapiens cDNA FLJ10242 fis, clone HEMBB1000630 PA
AL133095.1 Homo sapiens mRNA; cDNA DKFZp434L1028 (from clone DKFZp434L1028) A
NM_018036.5 Homo sapiens autophagy related 2B (ATG2B), mRNA P
BC015016.2 Homo sapiens ATG2 autophagy related 2 homolog B (S. cerevisiae), mRNA (cDNA clone IMAGE:3920437), partial cds PA
BC015851.1 Homo sapiens, clone IMAGE:4657824, mRNA PA
AK302641.1 Homo sapiens cDNA FLJ58344 complete cds P
AK055200.1 Homo sapiens cDNA FLJ30638 fis, clone CTONG2002721, weakly similar to VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13 P

EST sequences (10 of 232) [Show all sequences]

AA983768.1 Clone IMAGE:1580857 mixed 3' read A
AA987455.1 Clone IMAGE:1601533 lung 3' read P
AA995922.1 Clone IMAGE:1635416 kidney 3' read A
AA904877.1 Clone IMAGE:1504117 mixed 3' read A
AI027616.1 Clone IMAGE:1645439 testis 3' read
AI079350.1 Clone IMAGE:1677677 mixed 3' read A
AI082249.1 Clone IMAGE:1662598 mixed 3' read A
AI094178.1 Clone IMAGE:1688145 mixed 3' read A
BX110639.1 Clone IMAGp998B08165_;_IMAGE:37521 brain A
BX104709.1 Clone IMAGp998I071961_;_IMAGE:795342 testis


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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