> Retinoblastoma binding protein 4 (RBBP4)
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UGID:133503     UniGene Hs.16003     Homo sapiens (human)   RBBP4 Order cDNA clone, Links
Retinoblastoma binding protein 4 (RBBP4)

Human protein-coding gene RBBP4. Represented by 1153 ESTs from 372 cDNA libraries. Corresponds to 3 reference sequences (different isoforms). [UniGene 133503 - Hs.16003]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_001090071.2 PREDICTED: histone-binding protein RBBP4 isoform 2 M. mulatta 100.0 437
NP_033056.2 Rbbp4 gene product M. musculus 100.0 424
NP_001101382.1 Rbbp4 gene product R. norvegicus 100.0 424
XP_001366492.1 PREDICTED: histone-binding protein RBBP4-like M. domestica 100.0 424
XP_003230003.1 PREDICTED: histone-binding protein RBBP4-like A. carolinensis 100.0 424
NP_990183.1 RBBP4 gene product G. gallus 100.0 424
NP_001233303.1 RBBP4 gene product P. troglodytes 100.0 424
NP_005601.1 RBBP4 gene product H. sapiens 100.0 424
XP_864445.1 PREDICTED: histone-binding protein RBBP4 isoform 8 C. lupus familiaris 100.0 424
XP_003356338.1 PREDICTED: histone-binding protein RBBP4-like S. scrofa 100.0 424
NP_001070481.1 RBBP4 gene product B. taurus 100.0 424
XP_004005062.1 PREDICTED: histone-binding protein RBBP4 O. aries 100.0 424
NP_001085185.1 histone-binding protein RBBP4-B X. laevis 99.8 424
NP_001011394.2 rbbp4 gene product X. tropicalis 99.8 424
XP_002194032.1 PREDICTED: similar to retinoblastoma-binding protein mRbAp48 T. guttata 99.5 444
NP_997760.1 rbb4 gene product D. rerio 99.3 423
NP_001163617.1 chromatin assembly factor 1 subunit, isoform B D. melanogaster 94.7 417
NP_492552.1 Protein LIN-53 C. elegans 81.2 414
NP_200631.1 histone-binding protein RBBP4 A. thaliana 70.2 420
XP_001696907.1 nucleosome remodeling factor C. reinhardtii 67.8 416
XP_960994.2 hypothetical protein NCU06679 N. crassa 52.7 419
Other hits (2 of 49) [Show all]SpeciesId(%)Len(aa)
XP_003962472.1 PREDICTED: histone-binding protein RBBP4-like T. rubripes 99.0 423
NP_001133542.1 Histone-binding protein RBBP4 S. salar 99.0 423

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; testis; uterus; uncharacterized tissue; embryonic tissue; eye; mixed; placenta; intestine; kidney; prostate; adrenal gland; skin; lung; thyroid; thymus; vascular; blood; muscle; lymph; liver; heart; pancreas; spleen; cervix; mouth; mammary gland; bone marrow; connective tissue; bladder; lymph node; ovary; tonsil; larynx; parathyroid; ascites; bone; pharynx; esophagus; trachea; salivary gland; stomach; pituitary gland; ear; umbilical cord; ganglia; nerve
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 1
Map position: 1p35.1
UniSTS entry: Chr 1 RH16653
UniSTS entry: Chr 1 SHGC-74547 [Map Viewer]
UniSTS entry: Chr 1 D11S2921
UniSTS entry: Chr 1 D8S2279
UniSTS entry: Chr 1 sY3084
UniSTS entry: Chr 1 SYNCOILIN__5360
UniSTS entry: Chr 1 D10S16
UniSTS entry: Chr 1 RH102670
UniSTS entry: Chr 1 RH70422 [Map Viewer]
UniSTS entry: Chr 1 SHGC-30801 [Map Viewer]
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (17)

BT007309.1 Homo sapiens retinoblastoma binding protein 4 mRNA, complete cds P
BC053904.1 Homo sapiens retinoblastoma binding protein 4, mRNA (cDNA clone MGC:61456 IMAGE:6526200), complete cds PA
NM_005610.2 Homo sapiens retinoblastoma binding protein 4 (RBBP4), transcript variant 1, mRNA PA
BC075836.1 Homo sapiens retinoblastoma binding protein 4, mRNA (cDNA clone MGC:88716 IMAGE:6338602), complete cds PA
AK222779.1 Homo sapiens mRNA for retinoblastoma binding protein 4 variant, clone: HEP00411 P
BC003092.1 Homo sapiens retinoblastoma binding protein 4, mRNA (cDNA clone MGC:1393 IMAGE:3356558), complete cds PA
BC015123.1 Homo sapiens, Similar to retinoblastoma-binding protein 4, clone IMAGE:3686783, mRNA, partial cds PA
AK056550.1 Homo sapiens cDNA FLJ31988 fis, clone NT2RP7008863 A
AK056356.1 Homo sapiens cDNA FLJ31794 fis, clone NT2RI2008808 A
AK054859.1 Homo sapiens cDNA FLJ30297 fis, clone BRACE2003168
AK312571.1 Homo sapiens cDNA, FLJ92946, Homo sapiens retinoblastoma binding protein 4 (RBBP4), mRNA P
AK299251.1 Homo sapiens cDNA FLJ53908 complete cds, highly similar to Histone-binding protein RBBP4 P
NM_001135256.1 Homo sapiens retinoblastoma binding protein 4 (RBBP4), transcript variant 3, mRNA PA
NM_001135255.1 Homo sapiens retinoblastoma binding protein 4 (RBBP4), transcript variant 2, mRNA PA
AF085904.1 Homo sapiens full length insert cDNA clone YQ51D06 A
X71810.1 H.sapiens IEF 9306 mRNA P
X74262.1 H.sapiens RbAp48 mRNA encoding retinoblastoma binding protein PA

EST sequences (10 of 1153) [Show all sequences]

AA961022.1 Clone IMAGE:1569763 lung 3' read A
AA973460.1 Clone IMAGE:1569105 lung 3' read A
AA999738.1 Clone IMAGE:1609118 mammary gland 3' read A
AA910222.1 Clone IMAGE:1493610 kidney 3' read A
AI016520.1 Clone IMAGE:1618426 testis 3' read A
AI023267.1 Clone IMAGE:1642149 testis 3' read A
AI032525.1 Clone IMAGE:1654771 mixed 3' read A
AI032919.1 Clone IMAGE:1655282 mixed 3' read A
AI138310.1 Clone IMAGE:1736290 testis 3' read PA
CB050830.1 Clone IMAGE:3272123 prostate 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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