> Transient receptor potential cation channel, subfamily C, member 6 (TRPC6)
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UGID:155511     UniGene Hs.159003     Homo sapiens (human)   TRPC6 Order cDNA clone, Links
Transient receptor potential cation channel, subfamily C, member 6 (TRPC6)

Human protein-coding gene TRPC6. Represented by 29 ESTs from 19 cDNA libraries. Corresponds to reference sequence NM_004621.5. [UniGene 155511 - Hs.159003]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_004612.2 TRPC6 gene product H. sapiens 100.0 930
XP_508715.2 PREDICTED: short transient receptor potential channel 6 isoform 12 P. troglodytes 99.7 930
XP_003910637.1 PREDICTED: short transient receptor potential channel 6, partial P. anubis 99.5 873
NP_038866.2 Trpc6 gene product M. musculus 96.1 929
XP_002665445.1 PREDICTED: short transient receptor potential channel 6 D. rerio 83.2 810
Other hits (2 of 22) [Show all]SpeciesId(%)Len(aa)
XP_003357304.2 PREDICTED: short transient receptor potential channel 6 isoform 2 S. scrofa 98.1 930
XP_002708649.1 PREDICTED: transient receptor potential cation channel, subfamily C, member 6 O. cuniculus 97.8 928

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: placenta; lung; prostate; brain; kidney; mixed; heart; eye; vascular; trachea
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 11
Map position: 11q22.1
UniSTS entry: Chr 11 SHGC-57985
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (12)

AF080394.2 Homo sapiens transient receptor potential protein 6 mRNA, complete cds PA
AJ006276.1 Homo sapiens mRNA for transient receptor potential protein TRP6 P
NM_004621.5 Homo sapiens transient receptor potential cation channel, subfamily C, member 6 (TRPC6), mRNA P
AK001960.1 Homo sapiens cDNA FLJ11098 fis, clone PLACE1005494, highly similar to Homo sapiens mRNA for transient receptor potential protein TRP6 P
AJ271066.1 Homo sapiens mRNA for transient receptor potential channel 6 (TRP6 gene) P
AJ271067.1 Homo sapiens mRNA for transient receptor potential channel 6, variant delta316-431 (TRP6 gene) P
AJ271068.1 Homo sapiens mRNA for transient receptor potential channel 6, variant delta377-431 (TRP6 gene) P
BC093660.1 Homo sapiens transient receptor potential cation channel, subfamily C, member 6, mRNA (cDNA clone MGC:120695 IMAGE:7939505), complete cds P
BC093658.1 Homo sapiens transient receptor potential cation channel, subfamily C, member 6, mRNA (cDNA clone MGC:120693 IMAGE:7939503), complete cds P
AK027769.1 Homo sapiens cDNA FLJ14863 fis, clone PLACE1001771, highly similar to Short transient receptor potential channel 6 P
AJ007018.1 Homo sapiens partial mRNA for putative capacitative calcium entry channel, (trp6 gene) P
AF086426.1 Homo sapiens full length insert cDNA clone ZD79C11 A

EST sequences (10 of 29) [Show all sequences]

BX098806.1 Clone IMAGp998J21793_;_IMAGE:346868 heart A
AI658667.1 Clone IMAGE:2251759 prostate 3' read PA
CD677635.1 Clone ho19h04 eye 5' read A
DR005772.1 Clone TC111045 prostate 5' read
BF001360.1 Clone IMAGE:3311095 prostate 3' read P
BF106229.1 Clone IMAGE:4043045 lung 5' read P
BF085698.1 placenta P
BF085706.1 placenta P
AU136989.1 Clone PLACE1005494 placenta 5' read P
DA296818.1 Clone BRHIP2009887 brain 5' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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