> Chromosome 20 open reading frame 173 (C20orf173)
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UGID:155377     UniGene Hs.158680     Homo sapiens (human)   C20orf173 Links
Chromosome 20 open reading frame 173 (C20orf173)

Human protein-coding gene C20orf173. Represented by 27 ESTs from 10 cDNA libraries. EST representation biased toward testis; germ cell tumor. Corresponds to 2 reference sequences (different isoforms). [UniGene 155377 - Hs.158680]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001138822.1 C20orf173 gene product H. sapiens 100.0 201
Other hits (2 of 6) [Show all]SpeciesId(%)Len(aa)
XP_001164708.2 PREDICTED: uncharacterized protein LOC745624 P. troglodytes 97.0 201
XP_003904856.1 PREDICTED: uncharacterized protein LOC101013364 P. anubis 88.6 201

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
Restricted Expression: testis [show more like this]
germ cell tumor [show more like this]
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: testis; mixed; uncharacterized tissue; blood
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 20
Map position: 20q11.22
UniSTS entry: Chr 20 RH102065
UniSTS entry: Chr 20 REN58077
UniSTS entry: Chr 20 ECD11052
UniSTS entry: Chr 20 REN58078
UniSTS entry: Chr 20 REN58082
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (3)

AK310337.1 Homo sapiens cDNA, FLJ17379 P
NM_001145350.1 Homo sapiens chromosome 20 open reading frame 173 (C20orf173), transcript variant 1, mRNA PA
NR_026933.1 Homo sapiens chromosome 20 open reading frame 173 (C20orf173), transcript variant 2, non-coding RNA PA

EST sequences (10 of 27) [Show all sequences]

BX115218.1 Clone IMAGp998E065037_;_IMAGE:2045933 uncharacterized tissue P
BX116149.1 Clone IMAGp998D103521_;_IMAGE:1394265 testis
AI371744.1 Clone IMAGE:2045933 uncharacterized tissue 3' read A
AI699332.1 Clone IMAGE:2301239 mixed 3' read A
AL040740.2 Clone DKFZp434B1715 testis 3' read A
AI829639.1 Clone IMAGE:2349466 mixed 3' read A
BP369331.1 Clone TST01708 testis 5' read P
DV080387.1 Clone MGC9.6.1.1.1.E04 mixed
DV080388.1 Clone MGC9.6.1.1.1.E04 mixed
BF592797.1 Clone IMAGE:3442682 uncharacterized tissue 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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