> TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa (TAF1)
NCBI UniGene banner graphic
PubMed Nucleotide Protein Genome Structure Popset Taxonomy
 Search
NCBI

UniGene
Homepage
FAQs
Help
Query Tips
Build Info
Library Browser
DDD
Download UniGene

Related Databases
Gene
HomoloGene
EST
SRA

NIH cDNA Projects
MGC | ZGC | XGC
Finding cDNAs
UGID:155342     UniGene Hs.158560     Homo sapiens (human)   TAF1 Links
TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa (TAF1)

Human protein-coding gene TAF1. Represented by 143 ESTs from 102 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 155342 - Hs.158560]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_004597.2 TAF1 gene product H. sapiens 100.0 1892
NP_001074477.1 transcription initiation factor TFIID subunit 1 M. musculus 97.2 1901
NP_001038250.1 transcription initiation factor TFIID subunit 1 D. rerio 87.5 1946
NP_001090177.1 inhibitor of growth family, member 1 X. laevis 66.7 131
NP_001163532.1 TBP-associated factor 1, isoform D D. melanogaster 58.6 2000
NP_493426.2 Protein TAF-1 C. elegans 53.9 701
Other hits (2 of 38) [Show all]SpeciesId(%)Len(aa)
XP_003365857.1 PREDICTED: transcription initiation factor TFIID subunit 1 E. caballus 99.3 1892
XP_002720132.1 PREDICTED: TBP-associated factor 1-like O. cuniculus 99.3 1876

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: mixed; uncharacterized tissue; lymph node; uterus; thymus; placenta; mammary gland; intestine; brain; pituitary gland; stomach; testis; kidney; pharynx; larynx; lung; pancreas; embryonic tissue; bone marrow; thyroid; prostate; eye; spleen; ovary; liver; mouth; bladder; connective tissue; ear; heart; skin; nerve; cervix; blood; muscle; bone
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: X
Map position: Xq13.1
UniSTS entry: Chr X RH172 [Map Viewer]
UniSTS entry: Chr X SGC34215 [Map Viewer]
UniSTS entry: Chr X DXS7502 [Map Viewer]
UniSTS entry: Chr 9 TAF2A2-1
UniSTS entry: Chr 9 WIAF-2170 [Map Viewer]
UniSTS entry: Chr 9 TAF2A2-3
UniSTS entry: TAFII250
UniSTS entry: Chr 9 TAF2A2-2
UniSTS entry: Chr X GDB:192491
UniSTS entry: Chr 9 TAF1L_3640
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (20)

AJ549250.3 Homo sapiens partial mRNA for putative DYT3 protein, splice variant 2c P
AJ549249.2 Homo sapiens partial mRNA for putative DYT3 protein, splice variant 2b P
AJ549248.3 Homo sapiens partial mRNA for putative DYT3 protein, splice variant 2a P
AJ555149.2 Homo sapiens partial mRNA for putative DYT3 protein, splice variant 2e P
AJ555148.2 Homo sapiens partial mRNA for putative DYT3 protein, splice variant 2d P
AJ549247.1 Homo sapiens partial mRNA for putative DYT3 protein, splice variant 1
AJ549246.2 Homo sapiens mRNA for putative DYT3 protein, splice variant 3 P
AJ549245.1 Homo sapiens mRNA for putative DYT3 protein, splice variant 4
NM_004606.3 Homo sapiens TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa (TAF1), transcript variant 1, mRNA PA
D90359.1 Homo sapiens ccg1 mRNA for DNA binding protein, complete cds P
AB209316.1 Homo sapiens mRNA for TBP-associated factor 1 isoform 2 variant protein P
AM711895.1 Homo sapiens partial mRNA for dystonia 3 (with Parkinsonism) (DYT3 gene) P
AM711894.1 Homo sapiens partial mRNA for dystonia 3 (with Parkinsonism) (DYT3 gene) P
AM711893.1 Homo sapiens partial mRNA for dystonia 3 (with Parkinsonism) (DYT3 gene) P
AM711892.1 Homo sapiens partial mRNA for dystonia 3 (with Parkinsonism) (DYT3 gene) P
AK310201.1 Homo sapiens cDNA, FLJ17243 P
AB300418.1 Homo sapiens N-TAF1 mRNA for TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, neuron specific isoform, complete cds P
NM_138923.2 Homo sapiens TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa (TAF1), transcript variant 2, mRNA PA
M73444.1 Human CCG1p mRNA, 5' flank P
X07024.1 Homo sapiens mRNA for CCG1 protein PA

EST sequences (10 of 143) [Show all sequences]

AI125912.1 Clone IMAGE:1712192 uterus 3' read P
BX102011.1 Clone IMAGp998E06368_;_IMAGE:193901 mixed P
AI191588.1 Clone IMAGE:1733446 testis 3' read A
AI221454.1 Clone IMAGE:1841015 mixed 3' read P
AI275999.1 Clone IMAGE:1990431 uterus 3' read
AI203401.1 Clone IMAGE:1942391 uncharacterized tissue 3' read A
AI246039.1 Clone IMAGE:1871954 intestine 3' read A
R35249.1 Clone IMAGE:136769 placenta 3' read P
AA724841.1 Clone IMAGE:1326989 mixed 3' read A
CB216741.1 Clone IMAGE:5938239 uterus 5' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
NLM | NIH | UniGene | Privacy Statement | Disclaimer | NCBI Help