> Calcium binding and coiled-coil domain 1 (CALCOCO1)
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UGID:154863     UniGene Hs.156667     Homo sapiens (human)   CALCOCO1 Order cDNA clone, Links
Calcium binding and coiled-coil domain 1 (CALCOCO1)

Human protein-coding gene CALCOCO1. Represented by 1087 ESTs from 324 cDNA libraries. Corresponds to 3 reference sequences (different isoforms). [UniGene 154863 - Hs.156667]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_509103.3 PREDICTED: calcium-binding and coiled-coil domain-containing protein 1 P. troglodytes 100.0 690
NP_065949.1 CALCOCO1 gene product H. sapiens 100.0 690
NP_080468.1 Calcoco1 gene product M. musculus 93.6 690
NP_001086958.1 calcium-binding and coiled-coil domain-containing protein 1-B X. laevis 55.5 541
NP_001103636.1 calcium-binding and coiled-coil domain-containing protein 1 D. rerio 47.7 155
Other hits (2 of 14) [Show all]SpeciesId(%)Len(aa)
XP_003906517.1 PREDICTED: calcium-binding and coiled-coil domain-containing protein 1 isoform 1 P. anubis 99.4 690
XP_001107444.2 PREDICTED: calcium-binding and coiled-coil domain-containing protein 1 isoform 3 M. mulatta 99.3 719

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; thymus; testis; placenta; lung; uterus; skin; intestine; uncharacterized tissue; connective tissue; kidney; mixed; trachea; mammary gland; mouth; embryonic tissue; vascular; prostate; thyroid; heart; spleen; pancreas; eye; pharynx; muscle; liver; bone marrow; stomach; larynx; blood; lymph node; parathyroid; adipose tissue; ovary; bone; amniotic fluid; adrenal gland; ganglia; salivary gland; pituitary gland; epididymis; ascites; nerve; cervix
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 12
Map position: 12q13.13
UniSTS entry: Chr 12 WI-11261 [Map Viewer]
UniSTS entry: Chr 12 STS-T71651
UniSTS entry: Chr 12 RH8151
UniSTS entry: Chr 12 ksks136
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (20)

AY211909.1 Homo sapiens sarcoma antigen NY-SAR-3 mRNA, partial cds P
BX538208.1 Homo sapiens mRNA; cDNA DKFZp686A11272 (from clone DKFZp686A11272) PA
AK122773.1 Homo sapiens cDNA FLJ16315 fis, clone SPLEN2032112, highly similar to Homo sapiens calcium binding and coiled-coil domain 1 (CALCOCO1), mRNA P
AY358397.1 Homo sapiens clone DNA44675 EESP2436 (UNQ2436) mRNA, complete cds P
AF370415.1 Homo sapiens PP13275 mRNA, complete cds PA
CR533567.1 Homo sapiens full open reading frame cDNA clone RZPDo834E1221D for gene KIAA1536, KIAA1536 protein; complete cds, incl. stopcodon P
AY563137.1 Homo sapiens calphoglin mRNA, complete cds P
AB040969.1 Homo sapiens mRNA for KIAA1536 protein, partial cds P
AK222646.1 Homo sapiens mRNA, coiled-coil transcriptional coactivator variant, clone: CBL04472 PA
AL136895.1 Homo sapiens mRNA; cDNA DKFZp434P097 (from clone DKFZp434P097) PA
BC003177.1 Homo sapiens calcium binding and coiled-coil domain 1, mRNA (cDNA clone MGC:4414 IMAGE:2957946), complete cds PA
NM_020898.2 Homo sapiens calcium binding and coiled-coil domain 1 (CALCOCO1), transcript variant 1, mRNA P
AK027881.1 Homo sapiens cDNA FLJ14975 fis, clone THYRO1001405, weakly similar to PLECTIN P
AK309199.1 Homo sapiens cDNA, FLJ99240 P
AK315578.1 Homo sapiens cDNA, FLJ96654 P
AK092788.1 Homo sapiens cDNA FLJ35469 fis, clone SMINT2006205, highly similar to Homo sapiens calcium binding and coiled-coil domain 1 (CALCOCO1), mRNA P
AK294424.1 Homo sapiens cDNA FLJ59620 complete cds, highly similar to Homo sapiens calcium binding and coiled-coil domain 1 (CALCOCO1), mRNA P
AK296497.1 Homo sapiens cDNA FLJ54085 complete cds, highly similar to Homo sapiens calcium binding and coiled-coil domain 1 (CALCOCO1), mRNA P
NM_001143682.1 Homo sapiens calcium binding and coiled-coil domain 1 (CALCOCO1), transcript variant 2, mRNA P
NR_026554.1 Homo sapiens calcium binding and coiled-coil domain 1 (CALCOCO1), transcript variant 3, non-coding RNA P

EST sequences (10 of 1087) [Show all sequences]

AI002424.1 Clone IMAGE:1601978 lung 3' read A
AI016093.1 Clone IMAGE:1638499 testis 3' read
AI051044.1 Clone IMAGE:1649037 parathyroid 3' read A
AI052030.1 Clone IMAGE:1667267 parathyroid 3' read
AI057122.1 Clone IMAGE:1676223 embryonic tissue 3' read A
R22488.1 Clone IMAGE:130595 placenta 5' read
AI143576.1 Clone IMAGE:1708936 heart 3' read
AI216118.1 Clone IMAGE:1884297 lung 3' read
AI222561.1 Clone IMAGE:1761910 kidney 3' read
AI270433.1 Clone IMAGE:1978819 stomach 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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