> Forkhead box A2 (FOXA2)
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UGID:154540     UniGene Hs.155651     Homo sapiens (human)   FOXA2 Order cDNA clone, Links
Forkhead box A2 (FOXA2)

Human protein-coding gene FOXA2. Represented by 75 ESTs from 30 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 154540 - Hs.155651]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_068556.2 FOXA2 gene product H. sapiens 100.0 462
NP_034576.2 Foxa2 gene product M. musculus 98.5 458
NP_001165629.1 forkhead box protein A2-A X. laevis 81.8 433
NP_571024.1 foxa2 gene product D. rerio 79.5 408
NP_524542.1 fork head, isoform A D. melanogaster 70.9 278
NP_001041116.1 Protein PHA-4, isoform c C. elegans 61.6 302
Other hits (2 of 38) [Show all]SpeciesId(%)Len(aa)
XP_001095078.2 PREDICTED: forkhead box protein A2 isoform 2 M. mulatta 99.3 462
XP_003134339.1 PREDICTED: hepatocyte nuclear factor 3-beta S. scrofa 99.1 462

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: lung; pancreas; intestine; mixed; kidney; ovary; uncharacterized tissue; liver; embryonic tissue; uterus; cervix; eye; ascites; connective tissue; mammary gland
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 20
Map position: 20p11
UniSTS entry: Chr 20 Foxa2
UniSTS entry: Chr 20 G59567
UniSTS entry: Chr 20 RH48123 [Map Viewer]
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (7)

AB028021.1 Homo sapiens HNF-3beta mRNA for hepatocyte nuclear factor-3 beta, complete cds P
NM_021784.4 Homo sapiens forkhead box A2 (FOXA2), transcript variant 1, mRNA PA
BC011780.2 Homo sapiens forkhead box A2, mRNA (cDNA clone MGC:19807 IMAGE:3940139), complete cds PA
BC006545.2 Homo sapiens forkhead box A2, mRNA (cDNA clone IMAGE:2821244), partial cds PA
BC019288.1 Homo sapiens, hepatocyte nuclear factor 3, beta, clone IMAGE:2821244, mRNA, partial cds PA
AK301611.1 Homo sapiens cDNA FLJ51352 complete cds, highly similar to Hepatocyte nuclear factor 3-beta P
NM_153675.2 Homo sapiens forkhead box A2 (FOXA2), transcript variant 2, mRNA PA

EST sequences (10 of 75) [Show all sequences]

AA961199.1 Clone IMAGE:1569834 lung 3' read A
AA974592.1 Clone IMAGE:1578748 mixed 3' read
AA987492.1 Clone IMAGE:1604287 lung 3' read P
BX093071.1 Clone IMAGp998L095449_;_IMAGE:2204312 uterus A
AI268650.1 Clone IMAGE:1910921 lung 3' read A
AI302734.1 Clone IMAGE:1898523 lung 3' read P
AI304529.1 Clone IMAGE:1912392 intestine 3' read
AI336388.1 Clone IMAGE:1951489 lung 3' read P
AI342818.1 Clone IMAGE:1910598 lung 3' read P
AI371038.1 Clone IMAGE:2045499 lung 3' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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