> Caudal type homeobox 1 (CDX1)
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UGID:131029     UniGene Hs.1545     Homo sapiens (human)   CDX1 Order cDNA clone, Links
Caudal type homeobox 1 (CDX1)

Human protein-coding gene CDX1. Represented by 38 ESTs from 16 cDNA libraries. EST representation biased toward ascites. Corresponds to reference sequence NM_001804.2. [UniGene 131029 - Hs.1545]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001795.2 CDX1 gene product H. sapiens 100.0 264
NP_034010.3 Cdx1 gene product M. musculus 89.2 267
NP_001081175.1 homeobox protein CDX-1 X. laevis 63.0 262
NP_001092232.1 cdx1b gene product D. rerio 61.2 254
Other hits (2 of 21) [Show all]SpeciesId(%)Len(aa)
XP_001108012.1 PREDICTED: homeobox protein CDX-1 M. mulatta 98.1 264
XP_003900407.1 PREDICTED: homeobox protein CDX-1 P. anubis 97.7 264

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
Restricted Expression: ascites [show more like this]
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: intestine; ascites; mixed; uncharacterized tissue
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 5
Map position: 5q32
UniSTS entry: Chr 5 RH70663 [Map Viewer]
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (10)

NM_001804.2 Homo sapiens caudal type homeobox 1 (CDX1), mRNA P
AF239666.1 Homo sapiens CDX1 homeobox protein (CDX1) mRNA, complete cds P
U15212.1 Human caudal-type homeobox protein (CDX1) mRNA, partial cds P
BC096251.1 Homo sapiens caudal type homeobox 1, mRNA (cDNA clone IMAGE:40005954), complete cds P
BC096249.1 Homo sapiens caudal type homeobox 1, mRNA (cDNA clone IMAGE:40005952), complete cds
BC096250.1 Homo sapiens caudal type homeobox 1, mRNA (cDNA clone IMAGE:40005953), complete cds P
BC096252.1 Homo sapiens caudal type homeobox 1, mRNA (cDNA clone MGC:116917 IMAGE:40005955), complete cds P
BC127122.1 Homo sapiens caudal type homeobox 1, mRNA (cDNA clone MGC:156115 IMAGE:40005957), complete cds P
BC127121.1 Homo sapiens cDNA clone IMAGE:40005956 P
U51095.1 Human homeobox protein Cdx1 mRNA, complete cds P

EST sequences (10 of 38) [Show all sequences]

AI732197.1 Clone IMAGE:881056 intestine 3' read
AI738580.1 Clone IMAGE:2392094 intestine 3' read A
AI807048.1 Clone IMAGE:2357792 mixed 3' read
BX282595.1 Clone IMAGp998L155941_;_IMAGE:2392094 intestine
AI821214.1 Clone IMAGE:881056 intestine 5' read
AI911156.1 Clone IMAGE:2329058 mixed 3' read A
AI915116.1 Clone IMAGE:2393676 intestine 3' read
AW009320.1 Clone IMAGE:2504305 intestine 3' read
AW182922.1 Clone IMAGE:2662061 mixed 3' read
AW272649.1 Clone IMAGE:2800976 intestine 3' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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