> RNA pseudouridylate synthase domain containing 4 (RPUSD4)
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UGID:153743     UniGene Hs.150458     Homo sapiens (human)   RPUSD4 Order cDNA clone, Links
RNA pseudouridylate synthase domain containing 4 (RPUSD4)

Human protein-coding gene RPUSD4. Represented by 416 ESTs from 197 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 153743 - Hs.150458]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_508851.2 PREDICTED: RNA pseudouridylate synthase domain-containing protein 4 P. troglodytes 100.0 376
NP_116184.2 RPUSD4 gene product H. sapiens 100.0 376
NP_082316.1 Rpusd4 gene product M. musculus 89.9 376
NP_001003495.1 zgc:92006 gene product D. rerio 53.6 342
Other hits (2 of 24) [Show all]SpeciesId(%)Len(aa)
XP_001112402.1 PREDICTED: RNA pseudouridylate synthase domain-containing protein 4-like isoform 1 M. mulatta 96.8 376
XP_003910979.1 PREDICTED: RNA pseudouridylate synthase domain-containing protein 4 P. anubis 96.5 376

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; uncharacterized tissue; intestine; prostate; kidney; lung; adipose tissue; ovary; esophagus; cervix; heart; blood; liver; vascular; spleen; connective tissue; stomach; placenta; thyroid; mouth; thymus; mammary gland; uterus; testis; eye; embryonic tissue; nerve; skin; larynx; ascites; mixed; muscle; bone; pancreas; adrenal gland; bone marrow; salivary gland; lymph node; pharynx; trachea; bladder
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 11
Map position: 11q24.2
UniSTS entry: Chr 11 RH48157
UniSTS entry: Chr 11 D11S2236E
UniSTS entry: Chr 11 EST189193 [Map Viewer]
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (7)

AK225320.1 Homo sapiens mRNA for RNA pseudouridylate synthase domain containing 4 variant, clone: HEP04716 P
AK027400.1 Homo sapiens cDNA FLJ14494 fis, clone MAMMA1003035, weakly similar to RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE C (EC 4.2.1.70) P
NM_032795.2 Homo sapiens RNA pseudouridylate synthase domain containing 4 (RPUSD4), transcript variant 1, mRNA PA
BC014131.2 Homo sapiens RNA pseudouridylate synthase domain containing 4, mRNA (cDNA clone MGC:20779 IMAGE:4621434), complete cds PA
AK308059.1 Homo sapiens cDNA, FLJ98007 P
AK300723.1 Homo sapiens cDNA FLJ51748 complete cds, highly similar to Homo sapiens RNA pseudouridylate synthase domain containing 4 (RPUSD4), mRNA P
NM_001144827.1 Homo sapiens RNA pseudouridylate synthase domain containing 4 (RPUSD4), transcript variant 2, mRNA PA

EST sequences (10 of 416) [Show all sequences]

R19399.1 Clone IMAGE:130005 mixed 3' read A
AI049587.1 Clone IMAGE:1700551 kidney 3' read A
BX095462.1 Clone IMAGp998N22136_;_IMAGE:130005 mixed A
AI206973.1 Clone IMAGE:1942423 uncharacterized tissue 3' read A
AI261441.1 Clone IMAGE:1868391 kidney 3' read A
CB106451.1 Clone L3SNU475-4-D12 liver 5' read P
AI244352.1 Clone IMAGE:1865359 kidney 3' read A
AI418052.1 Clone IMAGE:2095685 prostate 3' read A
AI419346.1 Clone IMAGE:2096330 brain 3' read A
AI423615.1 Clone IMAGE:2103743 brain 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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