> Collagen, type IV, alpha 6 (COL4A6)
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UGID:151887     UniGene Hs.145586     Homo sapiens (human)   COL4A6 Order cDNA clone, Links
Collagen, type IV, alpha 6 (COL4A6)

Human protein-coding gene COL4A6. Represented by 98 ESTs from 50 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 151887 - Hs.145586]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_378667.1 COL4A6 gene product H. sapiens 100.0 1689
NP_444415.2 collagen, type IV, alpha 6 precursor M. musculus 84.3 1690
NP_723044.1 collagen type IV, isoform A D. melanogaster 61.2 374
NP_510663.1 Protein LET-2, isoform b C. elegans 54.0 1727
NP_001116702.1 collagen alpha-5(IV) chain precursor D. rerio 53.3 1648
NP_001089312.1 collagen, type IX, alpha 2 precursor X. laevis 46.8 440
Other hits (2 of 42) [Show all]SpeciesId(%)Len(aa)
XP_521216.4 PREDICTED: collagen alpha-6(IV) chain P. troglodytes 98.6 1629
XP_001098448.1 PREDICTED: collagen alpha-6(IV) chain isoform 3 M. mulatta 97.8 1686

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: embryonic tissue; uterus; uncharacterized tissue; esophagus; prostate; eye; mixed; cervix; lung; testis; mammary gland; stomach; brain; heart; placenta; skin; intestine; muscle
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: X
Map position: Xq22
UniSTS entry: Chr X WI-18796 [Map Viewer]
UniSTS entry: Chr X DXS7494 [Map Viewer]
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (15)

BT007228.1 Homo sapiens collagen, type IV, alpha 6 mRNA, complete cds
BC070203.1 Homo sapiens collagen, type IV, alpha 6, mRNA (cDNA clone IMAGE:4274195), complete cds A
BC005305.1 Homo sapiens collagen, type IV, alpha 6, mRNA (cDNA clone IMAGE:3951220), complete cds A
BC000874.1 Homo sapiens, Similar to collagen, type IV, alpha 6, clone IMAGE:3461295, mRNA PA
NM_001847.2 Homo sapiens collagen, type IV, alpha 6 (COL4A6), transcript variant A, mRNA PA
NM_033641.2 Homo sapiens collagen, type IV, alpha 6 (COL4A6), transcript variant B, mRNA PA
EU182215.1 Homo sapiens collagen alpha 6 type IV mRNA, partial cds P
BC140855.1 Homo sapiens collagen, type IV, alpha 6, mRNA (cDNA clone MGC:176532 IMAGE:9021723), complete cds P
AK098221.1 Homo sapiens cDNA FLJ40902 fis, clone UTERU2004061
AK300502.1 Homo sapiens cDNA FLJ60893 complete cds, highly similar to Collagen alpha-6(IV) chain precursor P
AK302734.1 Homo sapiens cDNA FLJ57675 complete cds, highly similar to Collagen alpha-6(IV) chain precursor P
L22763.1 Human alpha-6 type IV collagen mRNA, 5' end P
BC144669.1 Homo sapiens collagen, type IV, alpha 6, mRNA (cDNA clone MGC:178217 IMAGE:9053200), complete cds P
U04845.1 Homo sapiens A type IV collagen (COL4A6) mRNA, complete cds P
D21337.1 Homo sapiens mRNA for collagen, complete cds P

EST sequences (10 of 98) [Show all sequences]

AA910008.1 Clone IMAGE:1525908 mixed 3' read A
CB050016.1 Clone IMAGE:3271775 prostate 3' read A
CB050017.1 Clone IMAGE:3271775 prostate 5' read
BX090415.1 Clone IMAGp998J126068_;_IMAGE:2440811 uterus A
AI273913.1 Clone IMAGE:1979202 stomach 3' read A
AI378422.1 Clone IMAGE:2070789 mixed 3' read
AI680557.1 Clone IMAGE:2322038 prostate 3' read A
R57437.1 Clone F3112 heart 5' read
AI889772.1 Clone IMAGE:2440584 uterus 3' read P
AI889828.1 Clone IMAGE:2440674 uterus 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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