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UGID:150915     UniGene Hs.138701     Homo sapiens (human)   TRAT1
T cell receptor associated transmembrane adaptor 1 (TRAT1)

Human protein-coding gene TRAT1. Represented by 35 ESTs from 21 cDNA libraries. Corresponds to reference sequence NM_016388.2. [UniGene 150915 - Hs.138701]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_001152059.1 PREDICTED: T-cell receptor-associated transmembrane adapter 1 isoform 2 P. troglodytes 100.0 185
NP_057472.2 TRAT1 gene product H. sapiens 100.0 185
NP_938039.2 Trat1 gene product M. musculus 71.3 192
Other hits (2 of 9) [Show all]SpeciesId(%)Len(aa)
XP_003893949.1 PREDICTED: T-cell receptor-associated transmembrane adapter 1-like isoform 1 P. anubis 94.1 186
XP_003363396.1 PREDICTED: t-cell receptor-associated transmembrane adapter 1-like E. caballus 71.6 196

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: thymus; blood; pharynx; mixed; stomach; liver; pancreas; bone marrow; uncharacterized tissue; intestine; lung
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 3
Map position: 3q13
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (6)

AJ224878.1 Homo sapiens mRNA for T-cell receptor interacting molecule (TRIM) protein P
AJ240085.1 Homo sapiens mRNA for T-cell receptor interacting molecule protein, splice variant (TRIM gene) P
NM_016388.2 Homo sapiens T cell receptor associated transmembrane adaptor 1 (TRAT1), mRNA P
AK291991.1 Homo sapiens cDNA FLJ75765 complete cds, highly similar to Homo sapiens T cell receptor associated transmembrane adaptor 1 (TRAT1), mRNA P
BC025713.1 Homo sapiens T cell receptor associated transmembrane adaptor 1, mRNA (cDNA clone MGC:34314 IMAGE:5227396), complete cds PA
AF161547.1 Homo sapiens HSPC062 mRNA, complete cds P

EST sequences (10 of 35) [Show all sequences]

BX111605.1 Clone IMAGp998B075289_;_IMAGE:2142630 stomach A
AI445595.1 Clone IMAGE:2142630 stomach 3' read
AI453185.1 Clone IMAGE:2143529 pancreas 3' read A
BX329167.2 Clone CS0DJ005YO17 blood 3' read PA
BX415345.2 Clone CS0CAP005YP11 thymus 5' read P
BX414763.2 Clone CS0CAP002YB11 thymus 3' read
BX414764.2 Clone CS0CAP002YB11 thymus 5' read P
CD522032.1 Clone IMAGE:30413837 blood 5' read P
CD639080.1 Clone IMAGE:30418504 blood 5' read P
BX506779.1 Clone DKFZp779H231 liver 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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