> Regulatory factor X, 3 (influences HLA class II expression) (RFX3)
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UGID:150651     UniGene Hs.136829     Homo sapiens (human)   RFX3 Order cDNA clone, Links
Regulatory factor X, 3 (influences HLA class II expression) (RFX3)

Human protein-coding gene RFX3. Represented by 100 ESTs from 49 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 150651 - Hs.136829]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_602304.1 RFX3 gene product H. sapiens 100.0 748
XP_001086729.2 PREDICTED: transcription factor RFX3 isoform 6 M. mulatta 99.9 765
XP_001491823.1 PREDICTED: transcription factor RFX3 isoform 1 E. caballus 99.9 748
XP_003480572.1 PREDICTED: transcription factor RFX3-like S. scrofa 99.8 588
NP_001159886.1 Rfx3 gene product M. musculus 99.7 748
XP_533540.2 PREDICTED: transcription factor RFX3 isoform 1 C. lupus familiaris 99.7 748
XP_002689661.1 PREDICTED: transcription factor RFX3 B. taurus 99.7 748
XP_004004396.1 PREDICTED: transcription factor RFX3 isoform 1 O. aries 99.6 748
XP_002708228.1 PREDICTED: regulatory factor X, 3 (influences HLA class II expression) O. cuniculus 99.6 748
NP_001073517.1 rfx3 gene product D. rerio 83.9 764
NP_001090132.1 DNA-binding protein RFX2 X. laevis 80.6 690
NP_649999.2 Rfx, isoform J D. melanogaster 54.7 711
NP_001254237.1 Protein DAF-19, isoform c C. elegans 46.6 236
Other hits (2 of 29) [Show all]SpeciesId(%)Len(aa)
XP_001364935.1 PREDICTED: transcription factor RFX3 M. domestica 99.3 748
XP_003911805.1 PREDICTED: transcription factor RFX3 P. anubis 99.3 740

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: testis; muscle; bone marrow; mammary gland; brain; uncharacterized tissue; uterus; mixed; blood; pancreas; placenta; thymus; skin; trachea; intestine; connective tissue; lung; liver; mouth; ovary; nerve; eye; lymph node
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 9
Map position: 9p24.2
UniSTS entry: Chr 9 D9S1708 [Map Viewer]
UniSTS entry: Chr 9 RFX3_2153
UniSTS entry: RH68633
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (7)

NM_002919.2 Homo sapiens regulatory factor X, 3 (influences HLA class II expression) (RFX3), transcript variant 1, mRNA P
BC067778.1 Homo sapiens regulatory factor X, 3 (influences HLA class II expression), mRNA (cDNA clone MGC:87155 IMAGE:5295394), complete cds PA
BC022191.2 Homo sapiens regulatory factor X, 3 (influences HLA class II expression), mRNA (cDNA clone MGC:3664 IMAGE:3531443), complete cds PA
AK289540.1 Homo sapiens cDNA FLJ75989 complete cds, highly similar to Homo sapiens regulatory factor X, 3 (influences HLA class II expression) (RFX3), transcript variant 2, mRNA P
AK310956.1 Homo sapiens cDNA, FLJ17998 P
NM_134428.1 Homo sapiens regulatory factor X, 3 (influences HLA class II expression) (RFX3), transcript variant 2, mRNA PA
X76092.1 H.sapiens HRFX3 mRNA PA

EST sequences (10 of 100) [Show all sequences]

AI004401.1 Clone IMAGE:1620775 testis 3' read PA
AI017287.1 Clone IMAGE:1638596 testis 3' read PA
AI150092.1 Clone IMAGE:1752384 testis 3' read PA
BX091373.1 Clone IMAGp998I215601_;_IMAGE:2262620 uterus A
BX092344.1 Clone IMAGp998P11544_;_IMAGE:251386 skin
AI203838.1 Clone IMAGE:1755890 testis 3' read PA
AI377999.1 Clone IMAGE:2091177 mixed 3' read A
AI684912.1 Clone IMAGE:2301884 mixed 3' read A
AI811824.1 Clone IMAGE:2262620 uterus 3' read A
AI924203.1 Clone IMAGE:2444330 uterus 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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