> Schwannomin interacting protein 1 (SCHIP1)
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UGID:150179     UniGene Hs.134665     Homo sapiens (human)   SCHIP1 Order cDNA clone, Links
Schwannomin interacting protein 1 (SCHIP1)

Human protein-coding gene SCHIP1. Represented by 311 ESTs from 135 cDNA libraries. Corresponds to 6 reference sequences (different isoforms). [UniGene 150179 - Hs.134665]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001184042.1 IQCJ-SCHIP1 gene product H. sapiens 100.0 562
NP_001229984.1 schwannomin-interacting protein 1 P. troglodytes 100.0 243
XP_003358701.1 PREDICTED: schwannomin-interacting protein 1-like isoform 2 S. scrofa 100.0 243
XP_004003260.1 PREDICTED: schwannomin-interacting protein 1 isoform 3 O. aries 99.6 255
NP_001106890.1 IQ motif containing J-schwannomin interacting protein 1 fusion protein M. musculus 96.8 558
NP_001017906.1 schip1 gene product D. rerio 96.7 243
NP_001089342.1 schwannomin interacting protein 1 X. laevis 96.3 243
Other hits (2 of 17) [Show all]SpeciesId(%)Len(aa)
XP_001520042.2 PREDICTED: schwannomin-interacting protein 1-like, partial O. anatinus 99.5 181
XP_001100390.1 PREDICTED: schwannomin-interacting protein 1 isoform 4 M. mulatta 99.4 488

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; embryonic tissue; mixed; eye; mouth; testis; vascular; lung; kidney; uncharacterized tissue; skin; uterus; placenta; blood; ovary; nerve; pineal gland; muscle; pancreas; intestine; heart; spinal cord; esophagus; connective tissue; liver; stomach; bone; prostate; cervix; bone marrow; ear; ganglia; mammary gland
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 3
Map position: 3q25.32-q25.33
UniSTS entry: Chr 3 A005Y17
UniSTS entry: Chr 3 G20592
UniSTS entry: Chr 3 SCHIP1
UniSTS entry: Chr 3 EST19B11
UniSTS entry: Chr 3 RH80343
UniSTS entry: Chr 3 G09423
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (15)

AF070614.1 Homo sapiens clone 24732 unknown mRNA, partial cds PA
NM_014575.3 Homo sapiens schwannomin interacting protein 1 (SCHIP1), transcript variant 1, mRNA P
AF145713.1 Homo sapiens SCHIP-1 mRNA, complete cds P
AF145714.1 Homo sapiens SCHIP-1-D22/253 mRNA, complete cds P
AF145715.1 Homo sapiens SCHIP-1-D241/253 mRNA, complete cds P
AK309223.1 Homo sapiens cDNA, FLJ99264 P
AK314662.1 Homo sapiens cDNA, FLJ95509, highly similar to Homo sapiens schwannomin interacting protein 1 (SCHIP1), mRNA P
AK091871.1 Homo sapiens cDNA FLJ34552 fis, clone IMR322000518, highly similar to Mus musculus schwannomin interacting protein 1 (Schip1), mRNA P
BC005947.1 Homo sapiens schwannomin interacting protein 1, mRNA (cDNA clone MGC:14583 IMAGE:4246326), complete cds PA
NM_001197113.1 Homo sapiens IQCJ-SCHIP1 readthrough (IQCJ-SCHIP1), transcript variant 1, mRNA P
NM_001197109.1 Homo sapiens schwannomin interacting protein 1 (SCHIP1), transcript variant 4, mRNA P
NM_001197108.1 Homo sapiens schwannomin interacting protein 1 (SCHIP1), transcript variant 3, mRNA P
NM_001197107.1 Homo sapiens schwannomin interacting protein 1 (SCHIP1), transcript variant 2, mRNA P
NM_001197114.1 Homo sapiens IQCJ-SCHIP1 readthrough (IQCJ-SCHIP1), transcript variant 2, mRNA P
BC036535.2 Homo sapiens schwannomin interacting protein 1, mRNA (cDNA clone MGC:33753 IMAGE:5263291), complete cds PA

EST sequences (10 of 311) [Show all sequences]

AA969220.1 Clone IMAGE:1580381 mixed 3' read A
AI089553.1 Clone IMAGE:1695495 uterus 3' read A
AI090790.1 Clone IMAGE:1691671 heart 3' read A
AI142460.1 Clone IMAGE:1697487 uterus 3' read A
CB054067.1 Clone IMAGE:3291193 brain 3' read A
CB054068.1 Clone IMAGE:3291193 brain 5' read P
AI168362.1 Clone IMAGE:1687728 mixed 3' read A
AI187092.1 Clone IMAGE:1741245 lung 3' read A
AI215732.1 Clone IMAGE:1884152 lung 3' read A
R35596.1 Clone IMAGE:38294 brain 5' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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