> Integrin, alpha 6 (ITGA6)
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UGID:149927     UniGene Hs.133397     Homo sapiens (human)   ITGA6 Order cDNA clone, Links
Integrin, alpha 6 (ITGA6)

Human protein-coding gene ITGA6. Represented by 442 ESTs from 232 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 149927 - Hs.133397]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_515909.3 PREDICTED: integrin alpha-6 isoform 4 P. troglodytes 100.0 1090
NP_001073286.1 ITGA6 gene product H. sapiens 100.0 1090
NP_032423.2 Itga6 gene product M. musculus 96.0 1072
NP_001138253.1 integrin alpha-6 precursor D. rerio 69.2 1068
NP_727679.1 multiple edematous wings, isoform A D. melanogaster 45.1 184
Other hits (2 of 26) [Show all]SpeciesId(%)Len(aa)
XP_001086200.2 PREDICTED: integrin alpha-6 M. mulatta 99.1 1090
XP_003907673.1 PREDICTED: integrin alpha-6 P. anubis 98.6 1085

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; intestine; testis; placenta; mammary gland; stomach; uncharacterized tissue; mouth; connective tissue; pharynx; thyroid; uterus; eye; pancreas; kidney; liver; skin; mixed; esophagus; embryonic tissue; heart; cervix; lung; prostate; bladder; spleen; trachea; muscle; umbilical cord; ear; spinal cord; lymph; ascites; ovary; vascular; larynx; nerve; ganglia; bone; adrenal gland; bone marrow; thymus; blood
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 2
Map position: 2q31.1
UniSTS entry: Chr 2 RH98245
UniSTS entry: Chr 2 G62018
UniSTS entry: Chr 2 SHGC-12676 [Map Viewer]
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (20)

BC050585.1 Homo sapiens integrin, alpha 6, mRNA (cDNA clone IMAGE:6150124), partial cds PA
NM_000210.2 Homo sapiens integrin, alpha 6 (ITGA6), transcript variant 2, mRNA P
AB208842.1 Homo sapiens mRNA for Integrin alpha-6 precursor variant protein P
DQ858220.1 Homo sapiens integrin alpha6B (ITGA6B) mRNA, exon B and partial cds P
NM_001079818.1 Homo sapiens integrin, alpha 6 (ITGA6), transcript variant 1, mRNA P
EF491812.1 Homo sapiens clone ITGA6 mRNA, partial sequence; alternatively spliced P
EF491790.1 Homo sapiens clone ITGA6 mRNA, partial sequence; alternatively spliced P
EF491782.1 Homo sapiens clone KCNH1 mRNA, partial sequence; alternatively spliced
AK311695.1 Homo sapiens cDNA, FLJ18737 P
AK307777.1 Homo sapiens cDNA, FLJ97725 PA
BC136456.1 Homo sapiens integrin, alpha 6, mRNA (cDNA clone MGC:168068 IMAGE:9020445), complete cds P
BC136455.1 Homo sapiens integrin, alpha 6, mRNA (cDNA clone MGC:168067 IMAGE:9020444), complete cds P
AK294436.1 Homo sapiens cDNA FLJ50953 complete cds, highly similar to Integrin alpha-6 precursor P
AK296496.1 Homo sapiens cDNA FLJ53579 complete cds, highly similar to Integrin alpha-6 precursor P
AF401206.1 Homo sapiens integrin alpha 6 (ITGA6) mRNA, 3' untranslated region A
BC007002.1 Homo sapiens integrin, alpha 6, mRNA (cDNA clone IMAGE:3950016) PA
X53586.1 Human mRNA for integrin alpha 6 P
S66196.1 integrin alpha 6A [human, mRNA Partial, 532 nt] P
X59512.1 H.sapiens mRNA for integrin alpha6 subunit P
S66213.1 integrin alpha 6B [human, mRNA Partial, 528 nt] PA

EST sequences (10 of 442) [Show all sequences]

AA961055.1 Clone IMAGE:1578807 mixed 3' read
AA969146.1 Clone IMAGE:1580263 mixed 3' read
AA987199.1 Clone IMAGE:1603277 lung 3' read P
R17993.1 Clone IMAGE:32493 brain 5' read
AI025693.1 Clone IMAGE:1644344 testis 3' read A
AI032700.1 Clone IMAGE:1655663 mixed 3' read P
AI040829.1 Clone IMAGE:1657574 embryonic tissue 3' read
AI049679.1 Clone IMAGE:1700437 kidney 3' read
AI094076.1 Clone IMAGE:1688514 mixed 3' read
AI095118.1 Clone IMAGE:1687181 brain 3' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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