> Trafficking protein particle complex 4 (TRAPPC4)
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UGID:149723     UniGene Hs.132760     Homo sapiens (human)   TRAPPC4 Order cDNA clone, Links
Trafficking protein particle complex 4 (TRAPPC4)

Human protein-coding gene TRAPPC4. Represented by 486 ESTs from 229 cDNA libraries. Corresponds to reference sequence NM_016146.4. [UniGene 149723 - Hs.132760]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_001100829.2 PREDICTED: trafficking protein particle complex subunit 4 isoform 1 M. mulatta 100.0 218
XP_003910852.1 PREDICTED: trafficking protein particle complex subunit 4 isoform 1 P. anubis 100.0 218
XP_508802.3 PREDICTED: trafficking protein particle complex subunit 4 P. troglodytes 100.0 218
NP_057230.1 TRAPPC4 gene product H. sapiens 100.0 218
NP_068561.1 trafficking protein particle complex subunit 4 M. musculus 99.1 218
NP_001090112.1 trafficking protein particle complex 4 X. laevis 90.9 218
NP_957058.1 trappc4 gene product D. rerio 90.4 218
NP_609247.1 Trs23 D. melanogaster 65.4 217
NP_505435.1 Protein F36D4.2 C. elegans 54.9 213
Other hits (2 of 34) [Show all]SpeciesId(%)Len(aa)
XP_860256.2 PREDICTED: trafficking protein particle complex subunit 4 isoform 2 C. lupus familiaris 99.1 218
XP_001503119.1 PREDICTED: trafficking protein particle complex subunit 4-like E. caballus 99.1 218

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; testis; lung; blood; skin; mouth; kidney; placenta; embryonic tissue; ovary; eye; pancreas; prostate; mammary gland; mixed; bone marrow; pharynx; ear; uterus; liver; intestine; pituitary gland; uncharacterized tissue; heart; thymus; lymph node; esophagus; umbilical cord; spleen; parathyroid; cervix; larynx; amniotic fluid; adrenal gland; lymph; ascites; stomach; bone; bladder; trachea; thyroid; muscle; vascular; connective tissue; pineal gland; salivary gland
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 11
Map position: 11q23.3
UniSTS entry: Chr 11 D11S4686 [Map Viewer]
UniSTS entry: Chr 11 WI-20793 [Map Viewer]
UniSTS entry: RH136090
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (11)

NM_016146.4 Homo sapiens trafficking protein particle complex 4 (TRAPPC4), mRNA PA
AF105025.1 Homo sapiens unknown mRNA PA
AF151862.1 Homo sapiens CGI-104 protein mRNA, complete cds P
AK025623.1 Homo sapiens cDNA: FLJ21970 fis, clone HEP05733, highly similar to AF161520 Homo sapiens HSPC172 mRNA PA
BC010866.1 Homo sapiens trafficking protein particle complex 4, mRNA (cDNA clone MGC:9507 IMAGE:3876778), complete cds PA
AK290520.1 Homo sapiens cDNA FLJ76607 complete cds, highly similar to Homo sapiens trafficking protein particle complex 4 (TRAPPC4), mRNA PA
AK293977.1 Homo sapiens cDNA FLJ53004 complete cds, highly similar to Trafficking protein particle complex subunit 4 PA
AK293914.1 Homo sapiens cDNA FLJ59189 complete cds, highly similar to Trafficking protein particle complex subunit 4 P
AK297422.1 Homo sapiens cDNA FLJ55104 complete cds, moderately similar to Trafficking protein particle complex subunit4 PA
AF161520.1 Homo sapiens HSPC172 mRNA, complete cds PA
AF078862.1 Homo sapiens PTD009 mRNA, complete cds PA

EST sequences (10 of 486) [Show all sequences]

AA960760.1 Clone IMAGE:1552153 uncharacterized tissue 3' read A
AA977028.1 Clone IMAGE:1558727 lung 3' read A
AA989490.1 Clone IMAGE:1606270 kidney 3' read A
AA928193.1 Clone IMAGE:1541906 mixed 3' read
AI017441.1 Clone IMAGE:1635699 kidney 3' read PA
AI056023.1 Clone IMAGE:1648551 parathyroid 3' read A
AI056923.1 Clone IMAGE:1669627 brain 3' read A
AI075220.1 Clone IMAGE:1667547 parathyroid 3' read A
AI077623.1 Clone IMAGE:1666988 skin 3' read A
AI093553.1 Clone IMAGE:1696346 uterus 3' read PA


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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