Coiled-coil domain containing 116 (CCDC116)

Restricted Expression:

testis [show more like this]

EST Profile:

Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]

GEO Profiles:

Experimental gene expression data (Gene Expression Omnibus).

cDNA Sources:

testis; brain; uncharacterized tissue; mixed; connective tissue

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Finding cDNAs

UGID:149286 UniGene Hs.131615 Homo sapiens (human) CCDC116

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Coiled-coil domain containing 116 (CCDC116)

Human protein-coding gene CCDC116. Represented by 33 ESTs from 9 cDNA libraries. EST representation biased toward testis. Corresponds to reference sequence NM_152612.2. [UniGene 149286 - Hs.131615]

SELECTED PROTEIN SIMILARITIES

Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.

Best Hits and Hits from model organisms		Species	Id(%)	Len(aa)
NP_689825.2 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	CCDC116 gene product	H. sapiens	100.0	612
NP_084055.2 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	Ccdc116 gene product	M. musculus	68.3	540
Other hits (2 of 10) [Show all]		Species	Id(%)	Len(aa)
XP_001168841.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	PREDICTED: coiled-coil domain-containing protein 116 isoform 2	P. troglodytes	98.0	636
XP_003905331.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	PREDICTED: LOW QUALITY PROTEIN: coiled-coil domain-containing protein 116	P. anubis	92.5	692

GENE EXPRESSION

Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.

MAPPING POSITION

Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.

	Chromosome:	22
	Map position:	22q11.21

SEQUENCES

Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (3)

NM_152612.2	Homo sapiens coiled-coil domain containing 116 (CCDC116), mRNA	PA
AK302030.1	Homo sapiens cDNA FLJ61602 complete cds, moderately similar to Rattus norvegicus coiled-coil domain containing 116 (Ccdc116), mRNA	PA
BC033499.1	Homo sapiens coiled-coil domain containing 116, mRNA (cDNA clone MGC:35219 IMAGE:5172053), complete cds	PA

EST sequences (10 of 33) [Show all sequences]

AI025315.1	Clone IMAGE:1643078	testis	3' read	A
AI216430.1	Clone IMAGE:1843895	mixed	3' read	A
AI285916.1	Clone IMAGE:1854901	mixed	3' read	A
CD557807.1	Clone IMAGE:30386874	testis	5' read	P
CV030213.1		mixed	5' read	P
DB040455.1	Clone TESTI2027279	testis	5' read	P
DB037010.1	Clone TESTI2022901	testis	5' read	P
DB046382.1	Clone TESTI2034910	testis	5' read	P
DB046590.1	Clone TESTI2035182	testis	5' read	P
DB048839.1	Clone TESTI2037992	testis	5' read	P

Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria