> DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 (DDX23)
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UGID:148665     UniGene Hs.130098     Homo sapiens (human)   DDX23 Order cDNA clone, Links
DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 (DDX23)

Human protein-coding gene DDX23. Represented by 1063 ESTs from 308 cDNA libraries. Corresponds to reference sequence NM_004818.2. [UniGene 148665 - Hs.130098]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_001104339.1 PREDICTED: probable ATP-dependent RNA helicase DDX23-like isoform 5 M. mulatta 100.0 819
XP_509035.2 PREDICTED: probable ATP-dependent RNA helicase DDX23 isoform 2 P. troglodytes 100.0 819
NP_004809.2 DDX23 gene product H. sapiens 100.0 819
XP_001504169.1 PREDICTED: probable ATP-dependent RNA helicase DDX23 isoform 1 E. caballus 100.0 819
XP_851051.1 PREDICTED: probable ATP-dependent RNA helicase DDX23 isoform 2 C. lupus familiaris 99.9 819
NP_001095672.1 DDX23 gene product B. taurus 99.9 819
XP_004006440.1 PREDICTED: probable ATP-dependent RNA helicase DDX23 O. aries 99.9 819
XP_003906352.1 PREDICTED: probable ATP-dependent RNA helicase DDX23 P. anubis 99.9 817
XP_002711079.1 PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 O. cuniculus 99.8 819
XP_003643496.1 PREDICTED: probable ATP-dependent RNA helicase DDX23, partial G. gallus 99.8 393
NP_001074450.1 probable ATP-dependent RNA helicase DDX23 M. musculus 99.6 818
NP_001100263.2 probable ATP-dependent RNA helicase DDX23 R. norvegicus 99.6 818
NP_956176.1 ddx23 gene product D. rerio 93.7 806
NP_609888.2 CG10333 D. melanogaster 77.7 818
NP_498260.2 Protein DDX-23 C. elegans 72.4 728
XP_964459.1 hypothetical protein NCU02803 N. crassa 59.4 705
NP_180929.1 DEAD-box ATP-dependent RNA helicase 21 A. thaliana 58.2 708
XP_001692956.1 pre-mRNA-splicing ATP-dependent RNA helicase C. reinhardtii 57.7 569
NP_001079703.1 similar to DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 5 (RNA helicase, 68kDa) X. laevis 48.2 199
NP_010529.3 Prp28p S. cerevisiae 47.9 217
Other hits (2 of 56) [Show all]SpeciesId(%)Len(aa)
XP_001381629.1 PREDICTED: probable ATP-dependent RNA helicase DDX23 M. domestica 99.4 817
XP_003126138.3 PREDICTED: probable ATP-dependent RNA helicase DDX23, partial S. scrofa 99.0 770

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; testis; thymus; placenta; lung; embryonic tissue; uterus; mouth; uncharacterized tissue; eye; lymph node; trachea; connective tissue; intestine; mixed; skin; prostate; spleen; ovary; mammary gland; adrenal gland; liver; lymph; pancreas; kidney; bone marrow; blood; cervix; muscle; stomach; heart; vascular; nerve; ascites; bone; esophagus; larynx; tonsil; bladder; umbilical cord; pharynx; salivary gland; ganglia; thyroid; adipose tissue
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 12
Map position: 12q13.12
UniSTS entry: Chr 12 D12S1952 [Map Viewer]
UniSTS entry: Chr 12 RH68064
UniSTS entry: Chr 19 RH47688
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (7)

AK128428.1 Homo sapiens cDNA FLJ46571 fis, clone THYMU3041428, highly similar to Probable ATP-dependent RNA helicase DDX23 (EC 3.6.1.-) P
NM_004818.2 Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 (DDX23), mRNA PA
BC002366.2 Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 23, mRNA (cDNA clone MGC:8416 IMAGE:2820898), complete cds PA
AK292921.1 Homo sapiens cDNA FLJ77678 complete cds, highly similar to Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 23, mRNA P
AK312379.1 Homo sapiens cDNA, FLJ92706, highly similar to Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 (DDX23),mRNA P
AK294877.1 Homo sapiens cDNA FLJ54028 complete cds, highly similar to Probable ATP-dependent RNA helicase DDX23 (EC 3.6.1.-) P
AF026402.1 Homo sapiens U5 snRNP 100 kD protein mRNA, complete cds PA

EST sequences (10 of 1063) [Show all sequences]

R14331.1 Clone IMAGE:29005 brain 5' read
AA988415.1 Clone IMAGE:1594124 kidney 3' read A
AI014604.1 Clone IMAGE:1607630 mammary gland 3' read
R18664.1 Clone IMAGE:30630 brain 5' read
AI024460.1 Clone IMAGE:1639578 testis 3' read A
AI039510.1 Clone IMAGE:1658927 embryonic tissue 3' read A
AI049657.1 Clone IMAGE:1700317 kidney 3' read A
AI081631.1 Clone IMAGE:1652860 mixed 3' read
AI144508.1 Clone IMAGE:1705777 heart 3' read P
AI150135.1 Clone IMAGE:1752918 testis 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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