> Spectrin repeat containing, nuclear envelope 1 (SYNE1)
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UGID:133042     UniGene Hs.12967     Homo sapiens (human)   SYNE1 Links
Spectrin repeat containing, nuclear envelope 1 (SYNE1)

Human protein-coding gene SYNE1. Represented by 557 ESTs from 244 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 133042 - Hs.12967]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_892006.3 SYNE1 gene product H. sapiens 100.0 8796
NP_001073154.1 Syne1 gene product M. musculus 91.4 3009
XP_001920330.1 PREDICTED: nesprin-1-like D. rerio 64.5 8610
Other hits (2 of 27) [Show all]SpeciesId(%)Len(aa)
XP_518815.4 PREDICTED: nesprin-1 isoform 3 P. troglodytes 99.3 8695
XP_003898096.1 PREDICTED: LOW QUALITY PROTEIN: nesprin-1-like P. anubis 98.4 8486

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; blood; uncharacterized tissue; mouth; pharynx; esophagus; thymus; eye; skin; uterus; mixed; pituitary gland; tonsil; liver; vascular; placenta; kidney; lymph node; connective tissue; trachea; lung; testis; thyroid; mammary gland; adrenal gland; stomach; spleen; muscle; intestine; embryonic tissue; prostate; parathyroid; lymph; pancreas; bone; heart; salivary gland; adipose tissue; nerve; ganglia; ovary; spinal cord; bone marrow
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 6
Map position: 6q25
UniSTS entry: Chr 6 A001Z10 [Map Viewer]
UniSTS entry: Chr 6 G19809
UniSTS entry: Chr 6 D6S319E [Map Viewer]
UniSTS entry: Chr 6 RH91895
UniSTS entry: Chr 6 SYNE1__5361
UniSTS entry: Chr 6 SGC38197 [Map Viewer]
UniSTS entry: Chr 6 STS-N23629 [Map Viewer]
UniSTS entry: Chr 1 D11S2921
UniSTS entry: Chr 6 RH45909 [Map Viewer]
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (44)

AB018339.2 Homo sapiens mRNA for KIAA0796 protein, partial cds P
AY184206.1 Homo sapiens nesprin-1 beta 2 mRNA, complete cds P
AY184203.1 Homo sapiens nesprin-1 alpha 2 mRNA, complete cds P
AY183142.1 Homo sapiens spectrin-like protein mRNA, partial cds P
AY135172.1 Homo sapiens Golgi/nuclear envelope protein (SYNE-1) mRNA, partial cds P
BX537837.1 Homo sapiens mRNA; cDNA DKFZp686K0193 (from clone DKFZp686K0193) PA
BX647837.1 Homo sapiens mRNA; cDNA DKFZp451B1511 (from clone DKFZp451B1511) PA
AK127076.1 Homo sapiens cDNA FLJ45133 fis, clone BRAWH3038055, weakly similar to Homo sapiens spectrin repeat containing, nuclear envelope 2 (SYNE2) P
AK123135.1 Homo sapiens cDNA FLJ41140 fis, clone BRACE2035441 P
AK122691.1 Homo sapiens cDNA FLJ16153 fis, clone BRAMY3000210, highly similar to Nesprin-1 P
NM_182961.3 Homo sapiens spectrin repeat containing, nuclear envelope 1 (SYNE1), transcript variant 1, mRNA P
AB033088.1 Homo sapiens mRNA for KIAA1262 protein, partial cds P
AF043290.2 Homo sapiens lymphocyte membrane associated protein (8B7) mRNA, complete cds P
CR933676.1 Homo sapiens mRNA; cDNA DKFZp781J13156 (from clone DKFZp781J13156) PA
BC090927.1 Homo sapiens spectrin repeat containing, nuclear envelope 1, mRNA (cDNA clone IMAGE:3077391), partial cds PA
AB051543.1 Homo sapiens mRNA for KIAA1756 protein, partial cds P
BC150289.1 Homo sapiens spectrin repeat containing, nuclear envelope 1, mRNA (cDNA clone IMAGE:8860128), partial cds P
AK057959.1 Homo sapiens cDNA FLJ25230 fis, clone STM01616 P
AK055440.1 Homo sapiens cDNA FLJ30878 fis, clone FEBRA2004490, highly similar to R.norvegicus mRNA for CPG2 protein P
AF444779.1 Homo sapiens myocyte inner nuclear membrane protein (MYNE1) mRNA, complete cds P
AY061755.1 Homo sapiens nesprin-1 beta mRNA, complete cds P
AY061756.1 Homo sapiens nesprin-1 alpha mRNA, complete cds P
AK308717.1 Homo sapiens cDNA, FLJ98758 PA
AK310977.1 Homo sapiens cDNA, FLJ18019 P
AL713682.1 Homo sapiens mRNA; cDNA DKFZp547N107 (from clone DKFZp547N107) PA
AK091651.1 Homo sapiens cDNA FLJ34332 fis, clone FEBRA2009265, highly similar to R.norvegicus mRNA for CPG2 protein P
AL833657.1 Homo sapiens mRNA; cDNA DKFZp667A1721 (from clone DKFZp667A1721) PA
FM162565.1 Homo sapiens mRNA for drop1 fusion protein (ORF gene) ovarian epithelium P
AK304825.1 Homo sapiens cDNA FLJ55924 complete cds, highly similar to Nesprin-1 P
AF535142.1 Homo sapiens enaptin mRNA, complete cds P
BC028616.1 Homo sapiens cDNA clone IMAGE:4821070, containing frame-shift errors PA
AK094094.1 Homo sapiens cDNA FLJ36775 fis, clone ADRGL2001119, weakly similar to Spectrin, beta, non-erythrocytic 1 P
BC031033.1 Homo sapiens cDNA clone IMAGE:4733036, with apparent retained intron A
AK316101.1 Homo sapiens cDNA, FLJ79000 complete cds, highly similar to Nesprin-1 P
NM_033071.3 Homo sapiens spectrin repeat containing, nuclear envelope 1 (SYNE1), transcript variant 2, mRNA P
JQ754365.1 Homo sapiens clone p12Nesp1a nesprin-1 (SYNE1) mRNA, complete cds, alternatively spliced P
JQ740786.1 Homo sapiens clone p41Nesp1a nesprin-1 (SYNE1) mRNA, complete cds, alternatively spliced PA
JQ740784.1 Homo sapiens clone p50Nesp1c nesprin-1 (SYNE1) mRNA, complete cds, alternatively spliced PA
JQ754366.1 Homo sapiens clone p53KASHNesp1a nesprin-1 (SYNE1) mRNA, complete cds, alternatively spliced P
JQ754364.1 Homo sapiens clone p23Nesp1d nesprin-1 (SYNE1) mRNA, complete cds, alternatively spliced P
JQ740785.1 Homo sapiens clone p31Nesp1d nesprin-1 (SYNE1) mRNA, complete cds, alternatively spliced P
JQ740783.1 Homo sapiens clone p56CHNesp1a nesprin-1 (SYNE1) mRNA, complete cds, alternatively spliced PA
AF495910.1 Homo sapiens nesprin-1 mRNA, complete cds P
BC039121.1 Homo sapiens spectrin repeat containing, nuclear envelope 1, mRNA (cDNA clone IMAGE:4830497), partial cds PA

EST sequences (10 of 557) [Show all sequences]

AA954756.1 Clone IMAGE:1560659 mixed 3' read P
AA985393.1 Clone IMAGE:1629574 brain 3' read P
T05899.1 Clone HFBDI33 brain
AI031971.1 Clone IMAGE:1650727 parathyroid 3' read
AI033370.1 Clone IMAGE:1655230 mixed 3' read
AI078250.1 Clone IMAGE:1675933 mixed 3' read
AI140035.1 Clone IMAGE:1691967 heart 3' read
AI140083.1 Clone IMAGE:1693745 heart 3' read A
AI150966.1 Clone IMAGE:1704914 heart 3' read
BX110777.1 Clone IMAGp998J22143_;_IMAGE:28196 brain


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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