> TRNA methyltransferase 6 homolog (S. cerevisiae) (TRMT6)
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UGID:148223     UniGene Hs.128791     Homo sapiens (human)   TRMT6 Order cDNA clone, Links
TRNA methyltransferase 6 homolog (S. cerevisiae) (TRMT6)

Human protein-coding gene TRMT6. Represented by 181 ESTs from 116 cDNA libraries. Corresponds to reference sequence NM_015939.3. [UniGene 148223 - Hs.128791]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_001166710.1 PREDICTED: tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 P. troglodytes 100.0 496
NP_057023.2 TRMT6 gene product H. sapiens 100.0 496
XP_003905098.1 PREDICTED: tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 P. anubis 99.6 496
NP_780322.2 Trmt6 gene product M. musculus 93.0 496
NP_001085466.1 MGC80147 protein X. laevis 78.0 467
NP_001032469.1 trmt6 gene product D. rerio 73.0 448
Other hits (2 of 22) [Show all]SpeciesId(%)Len(aa)
XP_001115807.1 PREDICTED: tRNA (adenine-N(1)-)-methyltransferase non-catalytic subunit TRM6-like M. mulatta 99.4 496
XP_004014397.1 PREDICTED: tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 O. aries 97.0 496

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; uncharacterized tissue; embryonic tissue; heart; intestine; ovary; cervix; liver; skin; stomach; esophagus; testis; placenta; connective tissue; prostate; mixed; lung; kidney; blood; muscle; mouth; uterus; adrenal gland; larynx; trachea; mammary gland; thymus; eye; ascites; pancreas; lymph node; spleen
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 20
Map position: 20p12.3
UniSTS entry: Chr 20 SHGC-33687 [Map Viewer]
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (8)

AB032979.1 Homo sapiens mRNA for KIAA1153 protein, partial cds P
AK000613.1 Homo sapiens cDNA FLJ20606 fis, clone KAT06232, highly similar to AF132943 Homo sapiens CGI-09 protein mRNA PA
NM_015939.3 Homo sapiens tRNA methyltransferase 6 homolog (S. cerevisiae) (TRMT6), mRNA P
AF132943.1 Homo sapiens CGI-09 protein mRNA, complete cds P
BC001262.1 Homo sapiens tRNA methyltransferase 6 homolog (S. cerevisiae), mRNA (cDNA clone MGC:5029 IMAGE:3458167), complete cds PA
AK309205.1 Homo sapiens cDNA, FLJ99246 P
AK308648.1 Homo sapiens cDNA, FLJ98689 P
AK300812.1 Homo sapiens cDNA FLJ51319 complete cds, highly similar to tRNA (adenine-N(1)-)-methyltransferase non-catalytic subunit TRM6 PA

EST sequences (10 of 181) [Show all sequences]

AA970882.1 Clone IMAGE:1576576 intestine 3' read
AI018466.1 Clone IMAGE:1642006 testis 3' read
AI094381.1 Clone IMAGE:1692058 heart 3' read
BX115160.1 Clone IMAGp998E091999_;_IMAGE:809840 ovary A
CB118994.1 Clone L8SCK0-17-B12 liver 5' read P
CB131654.1 Clone L14ChoiCK0-4-F05 liver 5' read P
CB147660.1 Clone L14ChoiCK0-17-E09 liver 5' read
AI273758.1 Clone IMAGE:1875522 intestine 3' read
AI291549.1 Clone IMAGE:1894440 placenta 3' read
AI357153.1 Clone IMAGE:2005969 uncharacterized tissue 3' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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